Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
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Dalk_0366PFAM: CoA-binding domain protein; ATP-grasp domain protein; KEGG: rca:Rcas_0076 acetyl coenzyme A synthetase subunit alpha; IMG reference gene:2503006063; PFAM: CoA binding domain; ATP-grasp domain. (709 aa)    
Predicted Functional Partners:
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
  
 0.877
Dalk_4382
PFAM: GCN5-related N-acetyltransferase; acetyl-CoA hydrolase/transferase; KEGG: syn:slr1888 hypothetical protein; IMG reference gene:2503010130; PFAM: Acetyl-CoA hydrolase/transferase N-terminal domain; Acetyltransferase (GNAT) family.
   
  0.699
Dalk_3782
Pyruvate carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: dol:Dole_0075 hypothetical protein; IMG reference gene:2503009526; PFAM: HMGL-like; Conserved carboxylase domain; Biotin-requiring enzyme.
     
 0.665
Dalk_3586
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: gka:GK0199 aldehyde dehydrogenase; IMG reference gene:2503009318; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase.
    
 0.567
Dalk_0538
PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpd:RPD_0602 carbamoyl-phosphate synthase L chain, ATP-binding; IMG reference gene:2503006238; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Carboxyl transferase domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme.
     
  0.550
Dalk_2057
KEGG: dol:Dole_1427 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylamine/glycine ligase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylglycinamide synthetase; IMG reference gene:2503007774; PFAM: Phosphoribosylglycinamide synthetase, N domain; AIR carboxylase; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylaminoimidazole carboxylase, PurE protein.
    
  0.550
Dalk_1629
2-Oxoglutarate synthase (alpha subunit); PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sfu:Sfum_0017 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; IMG reference gene:2503007339; PFAM: domain; Transketolase, C-terminal domain.
  
 0.513
Dalk_2231
2-oxoacid ferredoxin oxidoreductase, alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: fno:Fnod_0111 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; IMG reference gene:2503007951; PFAM: domain; Transketolase, C-terminal domain.
  
 0.513
Dalk_2713
2-Oxoglutarate synthase (alpha subunit); PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: dol:Dole_3021 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503008436; PFAM: domain.
  
 0.513
Dalk_0519
Ferredoxin-dependent glutamate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dol:Dole_2275 ferredoxin-dependent glutamate synthase; IMG reference gene:2503006219; PFAM: 4Fe-4S binding domain; Conserved region in glutamate synthase.
   
 
  0.496
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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