STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0449Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; KEGG: dde:Dde_0803 precorrin-6Y C5,15-methyltransferase (decarboxylating); TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; putative methyltransferase; methyltransferase small; Protein of unknown function methylase putative; IMG reference gene:2503006149; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); Tetrapyrrole (Corrin [...] (405 aa)    
Predicted Functional Partners:
Dalk_0445
PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: gme:Gmet_0477 precorrin-8X methylmutase; IMG reference gene:2503006145; PFAM: Precorrin-8X methylmutase.
 
 
 0.999
Dalk_0446
TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sfu:Sfum_2135 precorrin-2 C20-methyltransferase; IMG reference gene:2503006146; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-2 C20-methyltransferase.
 
 0.999
Dalk_0448
TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: nmr:Nmar_0083 cobalamin biosynthesis protein CbiD; IMG reference gene:2503006148; PFAM: CbiD; TIGRFAM: cobalamin biosynthesis protein CbiD.
 
 0.999
Dalk_0450
TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: hmo:HM1_2389 precorrin-4 C11-methyltransferase; IMG reference gene:2503006150; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase.
 
 0.999
Dalk_0452
TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: dps:DP0224 precorrin-3B C17-methyltransferase (CobJ); IMG reference gene:2503006152; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase.
 
 
 0.999
Dalk_0451
PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: tex:Teth514_0314 cobalamin biosynthesis protein CbiG; IMG reference gene:2503006151; PFAM: Cobalamin synthesis G C-terminus; Cobalamin synthesis G N-terminal.
 
  
 0.998
Dalk_0453
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; IMG reference gene:2503006153; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyric acid synthase CobQ.
 
  
 0.991
Dalk_0457
TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: dol:Dole_1233 cobalamin biosynthesis protein CobD; IMG reference gene:2503006157; PFAM: CobD/Cbib protein; TIGRFAM: cobalamin biosynthesis protein CobD.
 
  
 0.985
Dalk_0444
TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: sfu:Sfum_1740 cobyrinic acid a,c-diamide synthase; IMG reference gene:2503006144; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; CobB/CobQ-like glutamine amidotransferase domain; TIGRFAM: cobyrinic acid a,c-diamide synthase.
  
 0.983
Dalk_3436
TIGRFAM: siroheme synthase; KEGG: dol:Dole_3236 siroheme synthase; IMG reference gene:2503009168; TIGRFAM: siroheme synthase, N-terminal domain.
    
 0.951
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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