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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0475TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: pca:Pcar_2593 dTDP-glucose 4,6-dehydratase; IMG reference gene:2503006175; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: dTDP-glucose 4,6-dehydratase. (355 aa)    
Predicted Functional Partners:
Dalk_1488
TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sfu:Sfum_2263 glucose-1-phosphate thymidylyltransferase; IMG reference gene:2503007198; PFAM: Nucleotidyl transferase; TIGRFAM: glucose-1-phosphate thymidylyltransferase, short form.
 
 0.999
Dalk_1489
KEGG: rxy:Rxyl_3120 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; IMG reference gene:2503007199; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase.
 
 0.999
Dalk_2507
dTDP-4-dehydrorhamnose reductase; PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: dol:Dole_2525 dTDP-4-dehydrorhamnose reductase; IMG reference gene:2503008228; PFAM: RmlD substrate binding domain; TIGRFAM: dTDP-4-dehydrorhamnose reductase.
 
 0.997
Dalk_1701
Nucleotide sugar dehydrogenase; KEGG: sat:SYN_00532 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; IMG reference gene:2503007411; PFAM: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; UDP-glucose/GDP-mannose dehydrogenase family, central domain; UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; TIGRFAM: nucleotide sugar dehydrogenase.
  
 
 0.968
Dalk_1807
PFAM: glycosyl transferase family 2; KEGG: lbf:LBF_4116 bifunctional glycosyltransferase/sugar pyrophosphorylase; IMG reference gene:2503007518; PFAM: Glycosyl transferase family 2.
  
 
 0.955
Dalk_1694
KEGG: bth:BT_3808 hypothetical protein; IMG reference gene:2503007404; PFAM: Nucleotidyl transferase.
  
 
 0.942
Dalk_4281
PFAM: polysaccharide biosynthesis protein; KEGG: cja:CJA_3417 polysaccharide biosynthesis family protein; IMG reference gene:2503010029; PFAM: Polysaccharide biosynthesis protein.
  
  
 0.901
Dalk_1324
Hypothetical protein Dalk_1324; KEGG: bfs:BF1900 putative LPS biosynthesis related flippase; IMG reference gene:2503007028.
  
  
 0.893
Dalk_0627
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dau:Daud_1770 DegT/DnrJ/EryC1/StrS aminotransferase; IMG reference gene:2503006328; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; TIGRFAM: UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase.
 
 
 0.886
Dalk_0883
Glutamine--scyllo-inositol transaminase; PFAM: aminotransferase class V; DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dol:Dole_3203 DegT/DnrJ/EryC1/StrS aminotransferase; IMG reference gene:2503006584; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family.
 
 
 0.863
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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