STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0527PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: glo:Glov_0246 ABC transporter related; IMG reference gene:2503006227; PFAM: ABC transporter. (500 aa)    
Predicted Functional Partners:
Dalk_1903
PFAM: ribosomal protein L5; KEGG: sfu:Sfum_1567 50S ribosomal protein L5; IMG reference gene:2503007615; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5.
   
 0.978
Dalk_1919
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; IMG reference gene:2503007631; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle.
  
 0.978
Dalk_1902
PFAM: ribosomal protein S14; KEGG: sfu:Sfum_1568 ribosomal protein S14; IMG reference gene:2503007614; PFAM: Ribosomal protein S14p/S29e.
   
  0.977
Dalk_1912
Ribosomal protein L2; One of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; IMG reference gene:2503007624; PFAM: Ribosomal Proteins L2, RNA binding domain; Ribosomal Proteins L2, C-terminal domain; TIGRFAM: ribosomal protein L2, bacterial/organellar.
   
  0.977
Dalk_1924
PFAM: ribosomal protein L1; KEGG: dol:Dole_0699 ribosomal protein L1; IMG reference gene:2503007636; PFAM: Ribosomal protein L1p/L10e family; TIGRFAM: ribosomal protein L1, bacterial/chloroplast.
   
  0.977
Dalk_1914
PFAM: ribosomal protein L4/L1e; KEGG: dol:Dole_0709 ribosomal protein L4/L1e; IMG reference gene:2503007626; PFAM: Ribosomal protein L4/L1 family; TIGRFAM: 50S ribosomal protein L4, bacterial/organelle.
   
 
 0.925
Dalk_2691
PFAM: ribosomal protein S9; KEGG: pca:Pcar_1899 30S ribosomal protein S9; IMG reference gene:2503008414; PFAM: Ribosomal protein S9/S16.
 
   0.925
Dalk_4114
PFAM: ribosomal protein L21; KEGG: dol:Dole_0086 ribosomal protein L21; IMG reference gene:2503009860; PFAM: Ribosomal prokaryotic L21 protein; TIGRFAM: ribosomal protein L21.
  
   0.925
Dalk_4742
PFAM: ribosomal protein S15; KEGG: gur:Gura_1905 30S ribosomal protein S15; IMG reference gene:2503010499; PFAM: Ribosomal protein S15; TIGRFAM: ribosomal protein S15, bacterial/organelle.
   
 
 0.923
Dalk_2692
Ribosomal protein L13; In Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; IMG reference gene:2503008415; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type.
  
   0.922
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.