STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0551PFAM: conserved hypothetical protein; KEGG: rca:Rcas_0178 hypothetical protein; IMG reference gene:2503006252; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein. (369 aa)    
Predicted Functional Partners:
Dalk_0550
TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: dol:Dole_2234 riboflavin biosynthesis protein RibF; IMG reference gene:2503006251; PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase.
 
   
 0.844
Dalk_0552
KEGG: sfu:Sfum_0147 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; IMG reference gene:2503006253; PFAM: Polypeptide deformylase; TIGRFAM: peptide deformylase.
       0.789
Dalk_0554
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dol:Dole_2231 sun protein; IMG reference gene:2503006255; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB.
       0.732
Dalk_0556
Ribulose-5-phosphate-epimerase; PFAM: ribulose-phosphate 3-epimerase; KEGG: dol:Dole_2229 ribulose-phosphate 3-epimerase; IMG reference gene:2503006257; PFAM: Ribulose-phosphate 3 epimerase family; TIGRFAM: ribulose-phosphate 3-epimerase.
     
 0.732
Dalk_0553
TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: dol:Dole_2232 methionyl-tRNA formyltransferase; IMG reference gene:2503006254; PFAM: Formyl transferase; Formyl transferase, C-terminal domain; TIGRFAM: methionyl-tRNA formyltransferase.
       0.717
Dalk_0555
PFAM: PASTA domain containing protein; KEGG: dol:Dole_2230 PASTA domain-containing protein; IMG reference gene:2503006256; PFAM: PASTA domain.
       0.705
Dalk_2978
PFAM: glycosyl transferase family 2; KEGG: gur:Gura_1323 glycosyl transferase family protein; IMG reference gene:2503008705; PFAM: Glycosyl transferase family 2.
 
 
 0.674
Dalk_2888
KEGG: dol:Dole_0153 hypothetical protein; IMG reference gene:2503008613.
 
  
  0.672
Dalk_1807
PFAM: glycosyl transferase family 2; KEGG: lbf:LBF_4116 bifunctional glycosyltransferase/sugar pyrophosphorylase; IMG reference gene:2503007518; PFAM: Glycosyl transferase family 2.
 
 
 0.589
Dalk_1797
PFAM: glycosyl transferase family 2; KEGG: aba:Acid345_0505 glycosyl transferase, family 2; IMG reference gene:2503007508; PFAM: Glycosyl transferase family 2.
 
 
 0.554
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.