STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0592KEGG: shl:Shal_0270 hypothetical protein; IMG reference gene:2503006293. (429 aa)    
Predicted Functional Partners:
Dalk_0594
PFAM: protein of unknown function DUF214; KEGG: slo:Shew_2659 hypothetical protein; IMG reference gene:2503006295; PFAM: Predicted permease.
 
    0.922
Dalk_0596
KEGG: shl:Shal_0266 hypothetical protein; IMG reference gene:2503006297.
 
     0.921
Dalk_0595
PFAM: protein of unknown function DUF214; KEGG: shl:Shal_0267 hypothetical protein; IMG reference gene:2503006296; PFAM: Predicted permease.
 
    0.918
Dalk_0593
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2507 ABC transporter related; IMG reference gene:2503006294; PFAM: ABC transporter.
 
     0.902
Dalk_3577
PFAM: B transposition protein domain protein; KEGG: bpt:Bpet4388 DNA transposition protein (gpB); IMG reference gene:2503009309; PFAM: Mu B transposition protein, C terminal.
  
 
 0.729
Dalk_4780
KEGG: pol:Bpro_3753 prophage MuSo1, DNA transposition protein, putative; IMG reference gene:2503010537; PFAM: ATPase family associated with various cellular activities (AAA).
  
 
 0.729
Dalk_0597
PFAM: regulatory protein TetR; KEGG: dol:Dole_1218 TetR family transcriptional regulator; IMG reference gene:2503006298; PFAM: Bacterial regulatory proteins, tetR family.
       0.649
Dalk_2140
KEGG: ppd:Ppro_0853 metal-binding protein-like protein; IMG reference gene:2503007860; PFAM: Predicted metal-binding protein (DUF2284).
  
     0.483
Dalk_4339
PFAM: GCN5-related N-acetyltransferase; KEGG: psa:PST_2696 IAA acetyltransferase; IMG reference gene:2503010087; PFAM: Acetyltransferase (GNAT) family.
  
     0.447
Dalk_4393
PFAM: GCN5-related N-acetyltransferase; KEGG: rru:Rru_A0143 GCN5-related N-acetyltransferase; IMG reference gene:2503010141; PFAM: Acetyltransferase (GNAT) family.
  
     0.434
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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