STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0614PFAM: GCN5-related N-acetyltransferase; KEGG: dol:Dole_0134 GCN5-related N-acetyltransferase; IMG reference gene:2503006315; PFAM: Acetyltransferase (GNAT) family. (149 aa)    
Predicted Functional Partners:
Dalk_0410
TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: dol:Dole_2490 argininosuccinate lyase; IMG reference gene:2503006107; PFAM: Lyase; TIGRFAM: argininosuccinate lyase.
 
 
 0.926
Dalk_0406
KEGG: dol:Dole_2494 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; IMG reference gene:2503006103; PFAM: Amino acid kinase family; TIGRFAM: acetylglutamate kinase.
  
 
 0.886
Dalk_1420
KEGG: dol:Dole_0059 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; IMG reference gene:2503007125; PFAM: ArgJ family; TIGRFAM: glutamate N-acetyltransferase/amino-acid acetyltransferase.
 
 
 0.886
Dalk_0613
KEGG: dol:Dole_0135 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; IMG reference gene:2503006314; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein, 1A family.
       0.777
Dalk_0612
PFAM: Abortive infection protein; KEGG: dol:Dole_0971 abortive infection protein; IMG reference gene:2503006313; PFAM: CAAX amino terminal protease family.
       0.776
Dalk_0611
KEGG: dol:Dole_0970 hypothetical protein; IMG reference gene:2503006312; PFAM: HEAT repeat.
       0.773
Dalk_0409
Argininosuccinate synthetase; Catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; IMG reference gene:2503006106; PFAM: Arginosuccinate synthase; TIGRFAM: argininosuccinate synthase.
  
 
 0.760
Dalk_0770
KEGG: gur:Gura_0291 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; type III restriction protein res subunit; SMART: DEAD-like helicases; IMG reference gene:2503006471; PFAM: Helicase conserved C-terminal domain; UvrB/uvrC motif; Type III restriction enzyme, res subunit; Ultra-violet resistance protein B; TIGRFAM: excinuclease ABC, B subunit.
    
  0.757
Dalk_3467
TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: dol:Dole_0632 excinuclease ABC, A subunit; IMG reference gene:2503009199; PFAM: ABC transporter; TIGRFAM: excinuclease ABC, A subunit.
    
  0.756
Dalk_4491
TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region ATPase domain protein; DNA mismatch repair protein domain protein; MutL dimerisation; KEGG: dol:Dole_0149 DNA mismatch repair protein MutL; IMG reference gene:2503010242; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; MutL C terminal dimerisation domain; DNA mismatch repair protein, C-terminal domain; TIGRFAM: DNA mismatch repair protein MutL.
    
 0.750
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.