STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0622Hypothetical protein Dalk_0622; KEGG: BDP1; B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB; IMG reference gene:2503006323. (389 aa)    
Predicted Functional Partners:
Dalk_0623
PFAM: DNA topoisomerase type IA zn finger domain protein; KEGG: mgm:Mmc1_3605 MJ0042 family finger-like protein; IMG reference gene:2503006324.
 
     0.862
Dalk_0621
PFAM: protein of unknown function DUF323; KEGG: midasin, putative; IMG reference gene:2503006322; PFAM: Formylglycine-generating sulfatase enzyme.
 
     0.839
Dalk_0662
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein; IMG reference gene:2503006363.
  
     0.580
Dalk_4850
TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; CoA protein activase; KEGG: tye:THEYE_A0388 (R)-2-hydroxyglutaryl-CoA dehydratase activator-related protein; IMG reference gene:2503010608; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; BadF/BadG/BcrA/BcrD ATPase family; CoA enzyme activase uncharacterised domain (DUF2229); TIGRFAM: CoA-substrate-specific enzyme activase, putative.
  
     0.566
Dalk_1120
PFAM: Scramblase family protein; KEGG: pca:Pcar_3021 hypothetical protein; IMG reference gene:2503006822; PFAM: Scramblase.
  
     0.510
Dalk_0790
KEGG: cts:Ctha_1186 hypothetical protein; IMG reference gene:2503006491.
  
     0.509
Dalk_0791
PFAM: protein of unknown function DUF350; KEGG: mgm:Mmc1_3173 protein of unknown function DUF350; IMG reference gene:2503006492; PFAM: Domain of Unknown Function (DUF350).
  
     0.476
Dalk_4129
KEGG: dol:Dole_1538 hypothetical protein; IMG reference gene:2503009875.
  
     0.467
Dalk_1018
PFAM: protein of unknown function DUF81; KEGG: sfu:Sfum_3924 protein of unknown function DUF81; IMG reference gene:2503006719; PFAM: Sulfite exporter TauE/SafE.
  
     0.433
Dalk_1755
PFAM: sigma-54 factor interaction domain-containing protein; KEGG: sfu:Sfum_2866 response regulator receiver protein; IMG reference gene:2503007466; PFAM: Sigma-54 interaction domain.
  
     0.428
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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