STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0624PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: cpy:Cphy_0303 anti-sigma-28 factor, FlgM; IMG reference gene:2503006325; PFAM: Anti-sigma-28 factor, FlgM; TIGRFAM: flagellar biosynthesis anti-sigma factor FlgM. (106 aa)    
Predicted Functional Partners:
Dalk_1000
RNA polymerase, sigma 28 subunit, FliA/WhiG; KEGG: lbf:LBF_0912 RNA polymerase sigma subunit; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; IMG reference gene:2503006701; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family.
  
 0.998
Dalk_0645
PFAM: flagellar protein FliS; KEGG: sat:SYN_02806 flagellin-specific chaperone; IMG reference gene:2503006346; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
  
 
 0.994
Dalk_0987
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mgm:Mmc1_0079 flagellar hook-associated protein FlgK; IMG reference gene:2503006688; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK.
  
  
 0.942
Dalk_1011
PFAM: flagellar basal body-associated protein FliL; KEGG: cco:CCC13826_1320 flagellar basal body-associated protein FliL; IMG reference gene:2503006712; PFAM: Flagellar basal body-associated protein FliL.
  
  
 0.934
Dalk_0664
TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: gbm:Gbem_3841 flagellar basal-body rod protein FlgB; IMG reference gene:2503006365; TIGRFAM: flagellar basal-body rod protein FlgB.
  
  
 0.923
Dalk_0665
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: aoe:Clos_1477 flagellar basal-body rod protein FlgC; IMG reference gene:2503006366; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC.
  
  
 0.915
Dalk_0992
TIGRFAM: flagella basal body P-ring formation protein FlgA; PFAM: SAF domain protein; KEGG: gbm:Gbem_3761 flagella basal body P-ring formation protein FlgA; IMG reference gene:2503006693; PFAM: SAF domain; TIGRFAM: flagella basal body P-ring formation protein FlgA.
  
  
 0.911
Dalk_1015
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: lip:LI0566 flagellar hook protein FlgE; IMG reference gene:2503006716; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins.
  
 
 0.909
Dalk_1016
Flagellar basal body rod modification protein; PFAM: flagellar hook capping protein; KEGG: ade:Adeh_1388 flagellar hook capping protein; IMG reference gene:2503006717; PFAM: Flagellar hook capping protein.
  
  
 0.889
Dalk_0993
Flagellar basal-body rod protein FlgG; Makes up the distal portion of the flagellar basal body rod; IMG reference gene:2503006694; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria.
  
  
 0.885
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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