close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0696PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: vvy:VV0269 hypothetical protein; IMG reference gene:2503006397; PFAM: DEAD/DEAH box helicase. (1090 aa)    
Predicted Functional Partners:
Dalk_3420
Translation elongation factor G; EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; IMG reference gene:2503009152; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain.
  
 0.992
Dalk_0833
TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dol:Dole_1660 translation elongation factor G; IMG reference gene:2503006534; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain.
   
 0.991
Dalk_3056
TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: dol:Dole_1617 translation elongation factor G; IMG reference gene:2503008783; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; Elongation factor G, domain IV; TIGRFAM: translation elongation factor EF-G; small GTP-binding protein domain.
   
 0.991
Dalk_3887
KEGG: sat:SYN_02852 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: DEAD-like helicases; IMG reference gene:2503009631; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); Domain of unknown function (DUF3418); DEAD/DEAH box helicase; Domain of unknown function (DUF1605); TIGRFAM: ATP-dependent helicase HrpA.
    
 0.986
Dalk_4145
PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: Peptidyl-prolyl cis-trans isomerase (ISS); K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B); IMG reference gene:2503009891; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
    
 0.977
Dalk_5135
PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: noc:Noc_2251 peptidylprolyl isomerase; IMG reference gene:2503010894; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
    
 0.977
Dalk_0137
PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: bfs:BF0134 putative RNA helicase dead-box protein; IMG reference gene:2503005832; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase.
    
 0.960
Dalk_2316
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: gsu:GSU0522 ATP-dependent RNA helicase RhlB; IMG reference gene:2503008036; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
    
 0.960
Dalk_2458
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: dol:Dole_2349 DEAD/DEAH box helicase domain-containing protein; IMG reference gene:2503008179; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
    
 0.960
Dalk_2747
DNA polymerase I; KEGG: dol:Dole_2573 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; IMG reference gene:2503008470; PFAM: 3'-5' exonuclease; 5'-3' exonuclease, C-terminal SAM fold; 5'-3' exonuclease, N-terminal resolvase-like domain; DNA polymerase family A; TIGRFAM: DNA polymerase I.
     
 0.854
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.