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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0705TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: stp:Strop_1639 choline dehydrogenase; IMG reference gene:2503006406; PFAM: GMC oxidoreductase; TIGRFAM: choline dehydrogenase. (554 aa)    
Predicted Functional Partners:
Dalk_2169
PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dol:Dole_2418 TPR repeat-containing protein; IMG reference gene:2503007889; PFAM: Tetratricopeptide repeat.
    
  0.883
Dalk_0252
PFAM: Ankyrin; KEGG: ankyrin repeat protein, putative; IMG reference gene:2503005948; PFAM: Ankyrin repeat.
    
 0.848
Dalk_0484
PFAM: Ankyrin; KEGG: hypothetical protein; IMG reference gene:2503006184; PFAM: Ankyrin repeat.
    
 0.848
Dalk_1469
KEGG: aba:Acid345_3676 hypothetical protein; IMG reference gene:2503007178; PFAM: Protein of unknown function (DUF3592).
    
 0.848
Dalk_3089
KEGG: abo:ABO_0637 hypothetical protein; IMG reference gene:2503008818; PFAM: Protein of unknown function (DUF3592).
    
 0.848
Dalk_3090
KEGG: mlo:mlr0133 hypothetical protein; IMG reference gene:2503008819; PFAM: Protein of unknown function (DUF3592).
    
 0.848
Dalk_3091
KEGG: bbt:BBta_4307 hypothetical protein; IMG reference gene:2503008820; PFAM: Protein of unknown function (DUF3592).
    
 0.848
Dalk_3592
PFAM: Ankyrin; KEGG: ankyrin repeat protein, putative; IMG reference gene:2503009324; PFAM: Ankyrin repeat.
    
 0.848
Dalk_3593
KEGG: ankyrin repeat protein, putative; IMG reference gene:2503009325.
    
 0.848
Dalk_0093
KEGG: ade:Adeh_2722 hypothetical protein; IMG reference gene:2503005788.
    
  0.791
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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