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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0804CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; IMG reference gene:2503006505; PFAM: Glutamine amidotransferase class-I; CTP synthase N-terminus; TIGRFAM: CTP synthase. (548 aa)    
Predicted Functional Partners:
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
  
 0.990
Dalk_1900
TIGRFAM: ribosomal protein L6 signature 1; PFAM: ribosomal protein L6; KEGG: dol:Dole_0723 ribosomal protein L6; IMG reference gene:2503007612; PFAM: Ribosomal protein L6; TIGRFAM: ribosomal protein L6, bacterial type.
   
 
 0.962
Dalk_1903
PFAM: ribosomal protein L5; KEGG: sfu:Sfum_1567 50S ribosomal protein L5; IMG reference gene:2503007615; PFAM: ribosomal L5P family C-terminus; Ribosomal protein L5.
   
 
 0.960
Dalk_2692
Ribosomal protein L13; In Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; IMG reference gene:2503008415; PFAM: Ribosomal protein L13; TIGRFAM: ribosomal protein L13, bacterial type.
  
 
 0.960
Dalk_1913
PFAM: Ribosomal protein L25/L23; KEGG: dol:Dole_0710 ribosomal protein L25/L23; IMG reference gene:2503007625; PFAM: Ribosomal protein L23.
   
 
 0.957
Dalk_3165
PFAM: ribosomal protein S2; KEGG: dol:Dole_0474 ribosomal protein S2; IMG reference gene:2503008894; PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type.
  
 0.954
Dalk_1923
PFAM: ribosomal protein L10; KEGG: sfu:Sfum_1547 ribosomal protein L10; IMG reference gene:2503007635; PFAM: Ribosomal protein L10.
   
 
 0.953
Dalk_1897
PFAM: ribosomal protein L30; KEGG: dol:Dole_0726 ribosomal protein L30; IMG reference gene:2503007609; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle.
   
 
 0.950
Dalk_1915
PFAM: ribosomal protein L3; KEGG: dol:Dole_0708 ribosomal protein L3; IMG reference gene:2503007627; PFAM: Ribosomal protein L3; TIGRFAM: 50S ribosomal protein L3, bacterial.
   
 0.947
Dalk_0390
PFAM: nucleoside diphosphate kinase; KEGG: fph:Fphi_0549 nucleoside-diphosphate kinase; IMG reference gene:2503006087; PFAM: Nucleoside diphosphate kinase.
  
 
 0.942
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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