STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0806PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: cth:Cthe_1343 D-tyrosyl-tRNA deacylase; IMG reference gene:2503006507; PFAM: D-Tyr-tRNA(Tyr) deacylase; TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase. (146 aa)    
Predicted Functional Partners:
Dalk_0807
Putative superoxide dismutase, Ni-type (NiSOD); PFAM: Superoxide dismutase Ni-type; KEGG: dps:DP2504 hypothetical protein; IMG reference gene:2503006508; PFAM: Nickel-containing superoxide dismutase.
       0.762
Dalk_0808
Putative aminopeptidase I zinc metalloprotease; Catalyzes the removal of amino acids from the N termini of peptides; IMG reference gene:2503006509; PFAM: Aminopeptidase I zinc metalloprotease (M18).
       0.619
Dalk_0805
PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: chu:CHU_2338 S1 RNA-binding domain-containing protein; IMG reference gene:2503006506; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain.
       0.570
Dalk_1632
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cbe:Cbei_3292 hypothetical protein; IMG reference gene:2503007342.
  
    0.543
Dalk_5107
KEGG: dol:Dole_2057 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; IMG reference gene:2503010866; PFAM: HD domain; ACT domain; Region found in RelA / SpoT proteins; TGS domain; TIGRFAM: (p)ppGpp synthetase, RelA/SpoT family.
  
    0.543
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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