STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0810PFAM: Methyltransferase type 12; KEGG: sat:SYN_00109 methyltransferase; IMG reference gene:2503006511; PFAM: Ribosomal protein L11 methyltransferase (PrmA). (184 aa)    
Predicted Functional Partners:
Dalk_1925
PFAM: ribosomal protein L11; KEGG: dde:Dde_2992 50S ribosomal protein L11; IMG reference gene:2503007637; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11.
    
 
 0.895
Dalk_0811
KEGG: dol:Dole_0995 hypothetical protein; IMG reference gene:2503006512.
       0.651
Dalk_0499
PFAM: protein of unknown function DUF558; KEGG: dol:Dole_1732 hypothetical protein; IMG reference gene:2503006199; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family.
  
  
 0.635
Dalk_0554
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dol:Dole_2231 sun protein; IMG reference gene:2503006255; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB.
  
  
 0.612
Dalk_2790
PFAM: heat shock protein DnaJ domain protein; KEGG: dps:DP1703 heat shock protein DnaJ (HSP40); IMG reference gene:2503008513; PFAM: DnaJ domain; DnaJ C terminal region.
  
  
 0.548
Dalk_3206
TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1492 chaperone protein DnaJ; IMG reference gene:2503008935; PFAM: DnaJ domain; DnaJ central domain (4 repeats); DnaJ C terminal region; TIGRFAM: chaperone protein DnaJ.
  
  
 0.548
Dalk_3239
PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1422 chaperone DnaJ domain-containing protein; IMG reference gene:2503008968; PFAM: DnaJ domain; DnaJ C terminal region.
  
  
 0.548
Dalk_2817
PFAM: cytochrome c class III; KEGG: dde:Dde_3182 cytochrome c3; IMG reference gene:2503008541; PFAM: Class III cytochrome C family.
  
  
 0.541
Dalk_4187
KEGG: dol:Dole_3170 cytochrome c, class III; IMG reference gene:2503009934; PFAM: Class III cytochrome C family.
  
  
 0.541
Dalk_0809
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro01936 enoyl-CoA hydratase; IMG reference gene:2503006510; PFAM: Enoyl-CoA hydratase/isomerase family.
       0.504
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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