STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0832TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: dol:Dole_2483 preprotein translocase, SecA subunit; IMG reference gene:2503006533; PFAM: SecA DEAD-like domain; SecA preprotein cross-linking domain; SEC-C motif; SecA Wing and Scaffold domain; TIGRFAM: preprotein translocase, SecA subunit. (841 aa)    
Predicted Functional Partners:
Dalk_1895
TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: dol:Dole_0728 preprotein translocase, SecY subunit; IMG reference gene:2503007607; PFAM: eubacterial secY protein; TIGRFAM: preprotein translocase, SecY subunit.
 
 
 0.994
Dalk_1353
TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: dol:Dole_0498 preprotein translocase, SecG subunit; IMG reference gene:2503007058; PFAM: Preprotein translocase SecG subunit; TIGRFAM: protein translocase, SecG subunit.
   
 0.989
Dalk_1927
TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: sfu:Sfum_1543 preprotein translocase, SecE subunit; IMG reference gene:2503007639; PFAM: SecE/Sec61-gamma subunits of protein translocation complex; TIGRFAM: preprotein translocase, SecE subunit, bacterial.
    
 0.986
Dalk_1598
KEGG: sat:SYN_00014 protein translocase subunit; IMG reference gene:2503007308; PFAM: Preprotein translocase subunit SecB.
   
 0.977
Dalk_3126
TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: dol:Dole_2782 cell division protein FtsZ; IMG reference gene:2503008855; PFAM: Tubulin/FtsZ family, GTPase domain; FtsZ family, C-terminal domain; TIGRFAM: cell division protein FtsZ.
 
 0.941
Dalk_1913
PFAM: Ribosomal protein L25/L23; KEGG: dol:Dole_0710 ribosomal protein L25/L23; IMG reference gene:2503007625; PFAM: Ribosomal protein L23.
   
 
 0.916
Dalk_1907
PFAM: ribosomal protein L29; KEGG: gka:GK0114 50S ribosomal protein L29; IMG reference gene:2503007619; PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29.
   
 
 0.915
Dalk_1186
TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dol:Dole_2442 protein-export membrane protein SecD; IMG reference gene:2503006888; PFAM: Protein export membrane protein; SecD/SecF GG Motif; TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family.
 
 
 0.904
Dalk_4133
TIGRFAM: YidC translocase/secretase; PFAM: 60 kDa inner membrane insertion protein; KEGG: dol:Dole_0102 60 kDa inner membrane insertion protein; IMG reference gene:2503009879; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain; membrane protein insertase, YidC/Oxa1 family, N-terminal domain.
 
 
 0.902
Dalk_3127
PFAM: cell division protein FtsA; KEGG: gur:Gura_3969 cell division protein FtsA; IMG reference gene:2503008856; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA.
 
  
 0.900
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.