STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0862KEGG: eca:ECA0779 hypothetical protein; IMG reference gene:2503006563; TIGRFAM: conserved hypothetical protein. (69 aa)    
Predicted Functional Partners:
Dalk_0861
Iron-containing alcohol dehydrogenase; Forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; IMG reference gene:2503006562; PFAM: Iron-containing alcohol dehydrogenase.
       0.746
Dalk_0863
KEGG: bur:Bcep18194_B0390 hypothetical protein; IMG reference gene:2503006564.
       0.678
Dalk_1476
KEGG: sml:Smlt3120 hypothetical protein; IMG reference gene:2503007186; PFAM: SnoaL-like polyketide cyclase.
    
 0.619
Dalk_0422
PFAM: alpha/beta hydrolase fold; KEGG: lic:LIC13077 hypothetical protein; IMG reference gene:2503006121; PFAM: alpha/beta hydrolase fold.
  
    0.508
Dalk_1171
Aspartate/glutamate/uridylate kinase; Catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; IMG reference gene:2503006873; PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase.
    
  0.468
Dalk_3330
KEGG: dol:Dole_0773 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; IMG reference gene:2503009060; PFAM: Amino acid kinase family; ACT domain; TIGRFAM: aspartate kinase, monofunctional class; aspartate kinase.
    
  0.468
Dalk_0747
Multihaem cytochrome; KEGG: ank:AnaeK_1781 hypothetical protein; IMG reference gene:2503006448.
    
  0.460
Dalk_1569
Adenylylsulfate reductase, alpha subunit; Catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; IMG reference gene:2503007279; PFAM: FAD binding domain; TIGRFAM: adenosine phosphosulphate reductase, alpha subunit.
    
  0.460
Dalk_3156
Succinate dehydrogenase, flavoprotein subunit A; Part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; IMG reference gene:2503008885; PFAM: domain; FAD binding domain; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup.
    
  0.460
Dalk_4443
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbt:BBta_2527 putative succinate dehydrogenase; IMG reference gene:2503010194; PFAM: domain; FAD binding domain.
    
  0.460
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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