STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0881PFAM: sugar isomerase (SIS); KEGG: dol:Dole_3201 glutamine--fructose-6-phosphate transaminase (isomerizing); IMG reference gene:2503006582; PFAM: SIS domain; Glutamine amidotransferases class-II. (1241 aa)    
Predicted Functional Partners:
Dalk_0130
TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: sat:SYN_02959 phosphoglucosamine mutase; IMG reference gene:2503005825; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutas [...]
 
 
 0.976
Dalk_4445
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aba:Acid345_4600 peptidase M20; IMG reference gene:2503010196; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain.
   
 0.939
Dalk_4098
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mtp:Mthe_0325 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; IMG reference gene:2503009843; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain.
   
 0.938
Dalk_1023
PFAM: phosphoglucose isomerase (PGI); KEGG: sfu:Sfum_3591 phosphoglucose isomerase (PGI); IMG reference gene:2503006724; PFAM: Phosphoglucose isomerase.
  
 
 0.933
Dalk_2057
KEGG: dol:Dole_1427 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; phosphoribosylamine/glycine ligase; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylglycinamide synthetase; IMG reference gene:2503007774; PFAM: Phosphoribosylglycinamide synthetase, N domain; AIR carboxylase; Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, C domain; TIGRFAM: phosphoribosylamine--glycine ligase; phosphoribosylaminoimidazole carboxylase, PurE protein.
  
 
 0.930
Dalk_0131
KEGG: sfu:Sfum_2914 UDP-N-acetylglucosamine pyrophosphorylase; IMG reference gene:2503005826.
 
  
 0.925
Dalk_0518
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503006218; PFAM: Pyridine nucleotide-disulphide oxidoreductase; GXGXG motif.
    
 0.920
Dalk_5100
TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: gsu:GSU1835 glutamine synthetase, type I; IMG reference gene:2503010859; PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I.
  
 
 0.898
Dalk_0519
Ferredoxin-dependent glutamate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin-dependent glutamate synthase; KEGG: dol:Dole_2275 ferredoxin-dependent glutamate synthase; IMG reference gene:2503006219; PFAM: 4Fe-4S binding domain; Conserved region in glutamate synthase.
  
 0.884
Dalk_1490
KEGG: pca:Pcar_1794 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; IMG reference gene:2503007200; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
    
 0.876
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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