STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0898Putative PAS/PAC sensor protein; KEGG: cya:CYA_0978 response regulator; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein; IMG reference gene:2503006599; PFAM: Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box. (409 aa)    
Predicted Functional Partners:
Dalk_0873
KEGG: hch:HCH_00809 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; IMG reference gene:2503006574; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
 
 
 0.949
Dalk_4452
KEGG: rxy:Rxyl_2663 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; IMG reference gene:2503010203; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box.
 
 
 0.948
Dalk_4200
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sat:SYN_00229 anti-sigma B factor antagonist; IMG reference gene:2503009947; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 0.935
Dalk_1049
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sfu:Sfum_4033 anti-sigma-factor antagonist; IMG reference gene:2503006750; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 0.930
Dalk_3917
KEGG: ote:Oter_2216 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; IMG reference gene:2503009661; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box.
 
 
 0.925
Dalk_0884
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mjl:Mjls_0395 anti-sigma-factor antagonist; IMG reference gene:2503006585; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 0.912
Dalk_0544
Multi-sensor hybrid histidine kinase; KEGG: azo:azo2482 putative hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; SMART: PAS domain containing protein; IMG reference gene:2503006244; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box.
 
 
 0.911
Dalk_0978
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: xca:xccb100_0599 anti-anti-sigma factor; IMG reference gene:2503006679; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor.
 
 0.911
Dalk_1048
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: pth:PTH_2273 anti-sigma regulatory factor; IMG reference gene:2503006749.
 
 0.909
Dalk_3498
KEGG: sfu:Sfum_4032 putative anti-sigma regulatory factor, serine/threonine protein kinase; IMG reference gene:2503009230; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 0.908
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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