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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0902PFAM: SNARE associated Golgi protein; KEGG: dps:DP0274 hypothetical protein; IMG reference gene:2503006603; PFAM: SNARE associated Golgi protein. (193 aa)    
Predicted Functional Partners:
Dalk_0901
PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: dol:Dole_2225 peptidase S13 D-Ala-D-Ala carboxypeptidase C; IMG reference gene:2503006602; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family.
       0.762
Dalk_0903
KEGG: dol:Dole_2742 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; IMG reference gene:2503006604; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); TIGRFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase.
  
    0.582
Dalk_2514
Sodium/hydrogen exchanger; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: sfu:Sfum_3938 sodium/hydrogen exchanger; IMG reference gene:2503008235; PFAM: TrkA-N domain; TrkA-C domain; Sodium/hydrogen exchanger family.
  
    0.469
Dalk_1741
PFAM: protein of unknown function DUF540; KEGG: bja:bll0692 CysZ-like protein; IMG reference gene:2503007452; PFAM: Protein of unknown function (DUF540).
  
     0.436
Dalk_2390
Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; KEGG: dol:Dole_1174 bacitracin resistance protein BacA; IMG reference gene:2503008110; PFAM: Bacitracin resistance protein BacA; TIGRFAM: undecaprenyl-diphosphatase UppP.
    
  0.430
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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