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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0905PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_0365 radical SAM domain-containing protein; IMG reference gene:2503006606; PFAM: Radical SAM superfamily. (289 aa)    
Predicted Functional Partners:
Dalk_3884
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; 4-vinyl reductase 4VR; SMART: AAA ATPase; KEGG: ank:AnaeK_0337 putative sigma54 specific transcriptional regulator; IMG reference gene:2503009628; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; V4R domain.
  
 
 0.685
Dalk_1478
PFAM: 4-vinyl reductase 4VR; KEGG: dol:Dole_0692 4-vinyl reductase 4VR; IMG reference gene:2503007188; PFAM: V4R domain.
  
 
 0.681
Dalk_0904
Hypothetical protein Dalk_0904; IMG reference gene:2503006605.
       0.598
Dalk_0906
Lytic transglycosylase catalytic; PFAM: extracellular solute-binding protein family 3; Lytic transglycosylase catalytic; KEGG: pca:Pcar_0524 periplasmic binding transport protein/transglycosylase; IMG reference gene:2503006607; PFAM: Transglycosylase SLT domain; Bacterial extracellular solute-binding proteins, family 3.
       0.473
Dalk_3710
KEGG: dol:Dole_0383 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; IMG reference gene:2503009454; PFAM: LytB protein; UbiA prenyltransferase family; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming).
  
 
 0.455
Dalk_1421
PFAM: UbiA prenyltransferase; KEGG: bph:Bphy_2275 UbiA prenyltransferase; IMG reference gene:2503007126; PFAM: UbiA prenyltransferase family.
   
 
 0.415
Dalk_2183
PFAM: UbiA prenyltransferase; KEGG: cch:Cag_1538 bacteriochlorophyll c synthase; IMG reference gene:2503007903; PFAM: UbiA prenyltransferase family.
   
 
 0.415
Dalk_5125
PFAM: UbiA prenyltransferase; KEGG: sto:ST1451 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; IMG reference gene:2503010884; PFAM: UbiA prenyltransferase family.
   
 
 0.415
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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