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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0937PFAM: conserved hypothetical protein; KEGG: dol:Dole_1984 hypothetical protein; IMG reference gene:2503006638; PFAM: Protein of unknown function (DUF1343). (389 aa)    
Predicted Functional Partners:
Dalk_3805
PFAM: beta-lactamase; KEGG: dol:Dole_0591 beta-lactamase; IMG reference gene:2503009549; PFAM: Beta-lactamase.
  
 0.984
Dalk_3986
Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: dol:Dole_0295 beta-N-acetylhexosaminidase; IMG reference gene:2503009731; PFAM: Glycosyl hydrolase family 3 N terminal domain.
 
 0.980
Dalk_0938
PFAM: ribonuclease H; KEGG: dol:Dole_1985 ribonuclease H; IMG reference gene:2503006639; PFAM: RNase H.
       0.797
Dalk_1093
PFAM: beta-lactamase; KEGG: mva:Mvan_3027 serine-type D-Ala-D-Ala carboxypeptidase; IMG reference gene:2503006794; PFAM: Beta-lactamase.
 
  
 0.671
Dalk_2461
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: nph:NP0998A mandelate racemase/muconate lactonizing family protein; IMG reference gene:2503008182; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; Mandelate racemase / muconate lactonizing enzyme, N-terminal domain.
 
    0.526
Dalk_3806
PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: dol:Dole_0590 peptidase U61 LD-carboxypeptidase A; IMG reference gene:2503009550; PFAM: LD-carboxypeptidase.
  
     0.445
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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