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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_0987TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mgm:Mmc1_0079 flagellar hook-associated protein FlgK; IMG reference gene:2503006688; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar hook-associated protein FlgK. (583 aa)    
Predicted Functional Partners:
Dalk_0986
TIGRFAM: flagellar hook-associated protein 3; KEGG: gme:Gmet_0439 flagellin-like; IMG reference gene:2503006687; PFAM: Bacterial flagellin N-terminal helical region; Bacterial flagellin C-terminal helical region; TIGRFAM: flagellar hook-associated protein 3.
  
 0.997
Dalk_1009
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dvl:Dvul_2915 flagellar motor switch protein FliN; IMG reference gene:2503006710; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN.
 
 
 0.997
Dalk_0645
PFAM: flagellar protein FliS; KEGG: sat:SYN_02806 flagellin-specific chaperone; IMG reference gene:2503006346; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS.
 
 
 0.996
Dalk_0993
Flagellar basal-body rod protein FlgG; Makes up the distal portion of the flagellar basal body rod; IMG reference gene:2503006694; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins; flagellar basal-body rod protein FlgG, Gram-negative bacteria.
 
  
 0.994
Dalk_1006
TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: sat:SYN_02834 flagellar biosynthetic protein; IMG reference gene:2503006707; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ.
 
  
 0.992
Dalk_1010
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sat:SYN_02837 flagellar motor switch protein; IMG reference gene:2503006711; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
 
  
 0.992
Dalk_1007
KEGG: gsu:GSU0423 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; IMG reference gene:2503006708; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP.
 
  
 0.991
Dalk_0990
PFAM: flagellar P-ring protein; KEGG: ppd:Ppro_3452 flagellar basal body P-ring protein; IMG reference gene:2503006691; PFAM: Flagellar P-ring protein.
 
  
 0.990
Dalk_1015
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: lip:LI0566 flagellar hook protein FlgE; IMG reference gene:2503006716; PFAM: Flagella basal body rod protein; Domain of unknown function (DUF1078); Flagellar basal body protein FlaE; TIGRFAM: fagellar hook-basal body proteins.
 
  
 0.990
Dalk_0665
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: aoe:Clos_1477 flagellar basal-body rod protein FlgC; IMG reference gene:2503006366; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgC.
 
  
 0.989
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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