STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1005TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: dvl:Dvul_0154 flagellar biosynthetic protein FliR; IMG reference gene:2503006706; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR. (260 aa)    
Predicted Functional Partners:
Dalk_1004
TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sat:SYN_02832 flagellar biosynthesis pathway component; IMG reference gene:2503006705; PFAM: FlhB HrpN YscU SpaS Family; TIGRFAM: type III secretion protein, YscU/HrpY family; flagellar biosynthetic protein FlhB.
 0.999
Dalk_1006
TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: sat:SYN_02834 flagellar biosynthetic protein; IMG reference gene:2503006707; PFAM: Bacterial export proteins, family 3; TIGRFAM: flagellar biosynthetic protein FliQ.
 
 0.999
Dalk_1007
KEGG: gsu:GSU0423 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; IMG reference gene:2503006708; PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP.
 
 0.999
Dalk_1009
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dvl:Dvul_2915 flagellar motor switch protein FliN; IMG reference gene:2503006710; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN.
 
 
 0.998
Dalk_1003
TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: gsu:GSU3056 flagellar biosynthesis protein FlhA; IMG reference gene:2503006704; PFAM: FHIPEP family; TIGRFAM: flagellar biosynthesis protein FlhA.
 
 
 0.997
Dalk_0670
ATPase FliI/YscN; KEGG: gbm:Gbem_3835 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; ATPase FliI/YscN; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; SMART: AAA ATPase; IMG reference gene:2503006371; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family.
 
 
 0.995
Dalk_1008
PFAM: flagellar biosynthesis protein FliO; KEGG: cvi:CV_3128 flagellar protein FliO; IMG reference gene:2503006709; PFAM: Flagellar biosynthesis protein, FliO.
  
 
 0.995
Dalk_1010
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: sat:SYN_02837 flagellar motor switch protein; IMG reference gene:2503006711; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
 
  
 0.992
Dalk_1016
Flagellar basal body rod modification protein; PFAM: flagellar hook capping protein; KEGG: ade:Adeh_1388 flagellar hook capping protein; IMG reference gene:2503006717; PFAM: Flagellar hook capping protein.
 
 
 0.992
Dalk_0664
TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: gbm:Gbem_3841 flagellar basal-body rod protein FlgB; IMG reference gene:2503006365; TIGRFAM: flagellar basal-body rod protein FlgB.
 
 
 0.989
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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