Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dalk_1027PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_2306 extracellular ligand-binding receptor; IMG reference gene:2503006728; PFAM: Receptor family ligand binding region. (377 aa)    
Predicted Functional Partners:
Dalk_3671
PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3103 inner-membrane translocator; IMG reference gene:2503009415; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.930
Dalk_1707
PFAM: inner-membrane translocator; KEGG: sfu:Sfum_1679 inner-membrane translocator; IMG reference gene:2503007417; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.929
Dalk_3946
PFAM: inner-membrane translocator; KEGG: dde:Dde_0260 branched-chain amino acid ABC transporter, permease protein; IMG reference gene:2503009690; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.923
Dalk_3670
PFAM: inner-membrane translocator; KEGG: sfu:Sfum_3104 inner-membrane translocator; IMG reference gene:2503009414; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.921
Dalk_3947
PFAM: inner-membrane translocator; KEGG: dde:Dde_0259 branched-chain amino acid ABC transporter, permease protein; IMG reference gene:2503009691; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.919
Dalk_4387
PFAM: inner-membrane translocator; KEGG: sat:SYN_00788 branched-chain amino acid transport system permease protein; IMG reference gene:2503010135; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.914
Dalk_3504
PFAM: inner-membrane translocator; KEGG: dol:Dole_3011 inner-membrane translocator; IMG reference gene:2503009236; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.905
Dalk_3672
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lsp:Bsph_4667 high-affinity branched-chain amino acid transport ATP-binding protein LivG (LIV-I protein G); IMG reference gene:2503009416; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
 
 0.902
Dalk_4385
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00786 branched-chain amino acid transport ATP-binding protein; IMG reference gene:2503010133; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
 
 0.897
Dalk_4386
PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transport system permease protein; IMG reference gene:2503010134; PFAM: Branched-chain amino acid transport system / permease component.
 
 
 0.890
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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