STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1036PFAM: Smr protein/MutS2; KEGG: sat:SYN_02482 smr domain-containing protein; IMG reference gene:2503006737; PFAM: Smr domain. (254 aa)    
Predicted Functional Partners:
Dalk_2403
PFAM: ribosomal protein L28; KEGG: dol:Dole_2056 ribosomal protein L28; IMG reference gene:2503008123; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28.
    
 
 0.798
Dalk_1916
PFAM: ribosomal protein S10; KEGG: dol:Dole_0707 ribosomal protein S10; IMG reference gene:2503007628; PFAM: Ribosomal protein S10p/S20e; TIGRFAM: ribosomal protein S10, bacterial/organelle.
   
 
 0.797
Dalk_1902
PFAM: ribosomal protein S14; KEGG: sfu:Sfum_1568 ribosomal protein S14; IMG reference gene:2503007614; PFAM: Ribosomal protein S14p/S29e.
    
   0.791
Dalk_1919
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; IMG reference gene:2503007631; PFAM: Ribosomal protein S12; TIGRFAM: ribosomal protein S12, bacterial/organelle.
   
   0.791
Dalk_1918
Ribosomal protein S7; Binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; IMG reference gene:2503007630; PFAM: Ribosomal protein S7p/S5e; TIGRFAM: ribosomal protein S7, bacterial/organelle.
   
   0.790
Dalk_0918
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; IMG reference gene:2503006619; PFAM: Ribosomal protein S18; TIGRFAM: ribosomal protein S18.
    
 
 0.786
Dalk_1195
PFAM: ribosomal protein S20; KEGG: sfu:Sfum_2087 ribosomal protein S20; IMG reference gene:2503006897; PFAM: Ribosomal protein S20; TIGRFAM: ribosomal protein S20.
   
   0.786
Dalk_1799
PFAM: ribosomal protein L35; KEGG: dol:Dole_3042 ribosomal protein L35; IMG reference gene:2503007510; PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35.
    
 
 0.786
Dalk_1800
TIGRFAM: ribosomal protein L20; KEGG: dol:Dole_3041 ribosomal protein L20; IMG reference gene:2503007511; PFAM: Ribosomal protein L20; TIGRFAM: ribosomal protein L20.
    
 
 0.786
Dalk_1891
PFAM: ribosomal protein S11; KEGG: gme:Gmet_0651 30S ribosomal protein S11; IMG reference gene:2503007603; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11.
    
 
 0.786
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.