STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1042PFAM: glycosyl transferase family 2; KEGG: mma:MM_0652 glycosyltransferase; IMG reference gene:2503006743; PFAM: Glycosyl transferase family 2. (464 aa)    
Predicted Functional Partners:
Dalk_1668
PFAM: glycosyl transferase family 2; KEGG: syn:slr2120 hypothetical protein; IMG reference gene:2503007378; PFAM: Cytidylyltransferase; Glycosyl transferase family 2.
 
 
 0.870
Dalk_1043
KEGG: rpt:Rpal_3594 hypothetical protein; IMG reference gene:2503006744; PFAM: Methyltransferase domain.
  
  
 0.834
Dalk_0014
PFAM: glycosyl transferase family 2; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pph:Ppha_1002 radical SAM domain protein; IMG reference gene:2503005709; PFAM: Radical SAM superfamily; Glycosyl transferase family 2.
 
 0.789
Dalk_1056
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_2590 beta-ketoacyl synthase; IMG reference gene:2503006757; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 0.783
Dalk_3586
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: gka:GK0199 aldehyde dehydrogenase; IMG reference gene:2503009318; PFAM: Aldehyde dehydrogenase family; Iron-containing alcohol dehydrogenase.
  
 
 0.782
Dalk_4154
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bra:BRADO4966 putative NADPH quinone oxidoreductase; IMG reference gene:2503009900; PFAM: Alcohol dehydrogenase GroES-like domain; Zinc-binding dehydrogenase.
  
 
 0.763
Dalk_2091
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: dol:Dole_0266 amine oxidase; IMG reference gene:2503007810; PFAM: Flavin containing amine oxidoreductase.
    
 0.756
Dalk_1489
KEGG: rxy:Rxyl_3120 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; IMG reference gene:2503007199; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase.
 
 
 0.730
Dalk_5204
PFAM: glycosyl transferase family 2; KEGG: ana:alr3176 probable glycosyl transferase; IMG reference gene:2503010963; PFAM: Glycosyl transferase family 2.
 
  
 0.716
Dalk_1118
PFAM: peptidase U32; KEGG: dol:Dole_0991 peptidase U32; IMG reference gene:2503006820; PFAM: Peptidase family U32.
  
  
 0.714
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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