STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1069PFAM: regulatory protein TetR; KEGG: dol:Dole_1135 TetR family transcriptional regulator; IMG reference gene:2503006770; PFAM: Bacterial regulatory proteins, tetR family. (207 aa)    
Predicted Functional Partners:
Dalk_1068
KEGG: dol:Dole_1134 alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; alanine dehydrogenase/PNT domain protein; IMG reference gene:2503006769; PFAM: Alanine dehydrogenase/PNT, C-terminal domain; Alanine dehydrogenase/PNT, N-terminal domain; TIGRFAM: alanine dehydrogenase.
       0.773
Dalk_1067
KEGG: dol:Dole_1133 hypothetical protein; IMG reference gene:2503006768.
       0.686
Dalk_4365
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: bld:BLi02021 hypothetical protein; IMG reference gene:2503010113; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.524
Dalk_1072
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dps:DP1925 Ntr family two-component system sensory/regulatory protein; IMG reference gene:2503006773; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
   
 
 0.487
Dalk_1066
PFAM: aminotransferase class-III; KEGG: dol:Dole_1132 aminotransferase class-III; IMG reference gene:2503006767; PFAM: Aminotransferase class-III.
       0.472
Dalk_1065
Transketolase, subunit A; PFAM: Transketolase domain protein; KEGG: dol:Dole_1131 transketolase domain-containing protein; IMG reference gene:2503006766; PFAM: Transketolase, thiamine diphosphate binding domain.
       0.458
Dalk_0202
PFAM: adenylate kinase; KEGG: dol:Dole_0469 adenylate kinase; IMG reference gene:2503005897; PFAM: Adenylate kinase; TIGRFAM: adenylate kinases.
  
  
  0.411
Dalk_1070
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: dde:Dde_0558 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; IMG reference gene:2503006771; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; LuxQ, periplasmic; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
       0.408
Dalk_1071
PFAM: response regulator receiver; KEGG: dde:Dde_1521 response regulator receiver domain-containing protein; IMG reference gene:2503006772; PFAM: Response regulator receiver domain.
       0.408
Dalk_0168
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: pmy:Pmen_0125 transcriptional regulator; IMG reference gene:2503005863; PFAM: DJ-1/PfpI family; Bacterial regulatory helix-turn-helix proteins, AraC family.
  
     0.406
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.