STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1082PFAM: Bile acid:sodium symporter; KEGG: gsu:GSU1411 sodium/bile acid symporter family protein; IMG reference gene:2503006783; PFAM: Sodium Bile acid symporter family. (341 aa)    
Predicted Functional Partners:
Dalk_1081
Hypothetical protein Dalk_1081; IMG reference gene:2503006782.
       0.758
Dalk_1080
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: lsa:LSA0218 thioredoxin; IMG reference gene:2503006781; PFAM: Thioredoxin; TIGRFAM: thioredoxin.
     
 0.692
Dalk_1085
OhcB2 (protein with transmembrane helices); KEGG: dvu:DVU3143 iron-sulfur cluster-binding protein; IMG reference gene:2503006786.
 
     0.653
Dalk_4725
PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: glo:Glov_0597 protein tyrosine phosphatase; IMG reference gene:2503010481; PFAM: Low molecular weight phosphotyrosine protein phosphatase.
  
  
 0.618
Dalk_4726
PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dol:Dole_2881 protein tyrosine phosphatase; IMG reference gene:2503010482; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin).
  
  
 0.618
Dalk_1084
OhcB1 (iron-sulfur binding domain protein with TAT signal); PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dol:Dole_0300 iron-sulfur cluster-binding protein; IMG reference gene:2503006785; PFAM: TAT (twin-arginine translocation) pathway signal sequence; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
     0.602
Dalk_1083
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dol:Dole_2294 pyridine nucleotide-disulphide oxidoreductase dimerisation region; IMG reference gene:2503006784; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain.
     
 0.559
Dalk_4735
PFAM: regulatory protein ArsR; KEGG: dol:Dole_2876 ArsR family transcriptional regulator; IMG reference gene:2503010491; PFAM: Bacterial regulatory protein, arsR family.
 
  
 0.518
Dalk_1086
OhcA (octaheme, c-type cytochrome); KEGG: dvl:Dvul_0242 cytochrome c family protein; IMG reference gene:2503006787; PFAM: Cytochrome c bacterial.
 
     0.499
Dalk_1087
OhcC (membrane-associated cytochrome b); PFAM: cytochrome B561; KEGG: dvl:Dvul_0241 cytochrome b561; IMG reference gene:2503006788; PFAM: Cytochrome b(N-terminal)/b6/petB.
 
     0.499
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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