STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1101PFAM: methyltransferase small; ribosomal L11 methyltransferase; KEGG: dol:Dole_1487 ribosomal L11 methyltransferase; IMG reference gene:2503006802; PFAM: Ribosomal protein L11 methyltransferase (PrmA); TIGRFAM: ribosomal protein L11 methyltransferase. (274 aa)    
Predicted Functional Partners:
Dalk_1925
PFAM: ribosomal protein L11; KEGG: dde:Dde_2992 50S ribosomal protein L11; IMG reference gene:2503007637; PFAM: Ribosomal protein L11, RNA binding domain; Ribosomal protein L11, N-terminal domain; TIGRFAM: 50S ribosomal protein L11.
    
 
 0.895
Dalk_1102
Carbon monoxide dehydrogenase nickel-insertion accessory protein CooC; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dol:Dole_1488 cobyrinic acid ac-diamide synthase; IMG reference gene:2503006803; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
       0.779
Dalk_0554
TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: dol:Dole_2231 sun protein; IMG reference gene:2503006255; PFAM: NOL1/NOP2/sun family; NusB family; TIGRFAM: ribosomal RNA small subunit methyltransferase RsmB.
 
  
 0.702
Dalk_0499
PFAM: protein of unknown function DUF558; KEGG: dol:Dole_1732 hypothetical protein; IMG reference gene:2503006199; PFAM: RNA methyltransferase; TIGRFAM: RNA methyltransferase, RsmE family.
  
  
 0.644
Dalk_1100
KEGG: dol:Dole_1486 metal-dependent hydrolase; IMG reference gene:2503006801; PFAM: Metallo-beta-lactamase superfamily.
       0.636
Dalk_2790
PFAM: heat shock protein DnaJ domain protein; KEGG: dps:DP1703 heat shock protein DnaJ (HSP40); IMG reference gene:2503008513; PFAM: DnaJ domain; DnaJ C terminal region.
  
  
 0.548
Dalk_3206
TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1492 chaperone protein DnaJ; IMG reference gene:2503008935; PFAM: DnaJ domain; DnaJ central domain (4 repeats); DnaJ C terminal region; TIGRFAM: chaperone protein DnaJ.
  
  
 0.548
Dalk_3239
PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: dol:Dole_1422 chaperone DnaJ domain-containing protein; IMG reference gene:2503008968; PFAM: DnaJ domain; DnaJ C terminal region.
  
  
 0.548
Dalk_2817
PFAM: cytochrome c class III; KEGG: dde:Dde_3182 cytochrome c3; IMG reference gene:2503008541; PFAM: Class III cytochrome C family.
  
  
 0.541
Dalk_4187
KEGG: dol:Dole_3170 cytochrome c, class III; IMG reference gene:2503009934; PFAM: Class III cytochrome C family.
  
  
 0.541
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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