STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1122PFAM: transcriptional regulator PadR family protein; KEGG: bce:BC1756 transcriptional repressor PadR; IMG reference gene:2503006824; PFAM: Transcriptional regulator PadR-like family. (177 aa)    
Predicted Functional Partners:
Dalk_1123
PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: mac:MA1902 iron-sulfur flavoprotein; IMG reference gene:2503006825; PFAM: NADPH-dependent FMN reductase.
       0.607
Dalk_1121
PFAM: protein of unknown function DUF159; KEGG: ava:Ava_3892 hypothetical protein; IMG reference gene:2503006823; PFAM: Uncharacterised ACR, COG2135.
 
    0.578
Dalk_3486
TIGRFAM: cytidyltransferase-related domain protein; KEGG: npu:Npun_F0631 ATPase/kinase involved in NAD metabolism; IMG reference gene:2503009218; TIGRFAM: nicotinamide-nucleotide adenylyltransferase, NadR type; cytidyltransferase-related domain.
   
    0.426
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.