STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1172Ectoine synthase; N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; IMG reference gene:2503006874; PFAM: Ectoine synthase. (130 aa)    
Predicted Functional Partners:
Dalk_1174
TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_3601 L-2,4-diaminobutyric acid acetyltransferase; IMG reference gene:2503006876; PFAM: Acetyltransferase (GNAT) family; TIGRFAM: diaminobutyrate acetyltransferase.
 
  
  0.986
Dalk_1173
Diaminobutyrate/2-oxoglutarate aminotransferase; Catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; IMG reference gene:2503006875; PFAM: Aminotransferase class-III; TIGRFAM: 2,4-diaminobutyrate 4-transaminases; diaminobutyrate--2-oxoglutarate aminotransferase.
 
  
 0.962
Dalk_1171
Aspartate/glutamate/uridylate kinase; Catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; IMG reference gene:2503006873; PFAM: Amino acid kinase family; TIGRFAM: aspartate kinase.
 
   
 0.931
Dalk_4984
PFAM: acetate and butyrate kinase; phosphate acetyl/butaryl transferase; KEGG: bca:BCE_4236 butyrate kinase; IMG reference gene:2503010743; PFAM: Acetokinase family; Phosphate acetyl/butaryl transferase; TIGRFAM: butyrate kinase.
    
 0.615
Dalk_0026
Methionyl-tRNA synthetase; methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; IMG reference gene:2503005721; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta [...]
    
  0.530
Dalk_1014
Chemotaxis protein MotA; PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA; IMG reference gene:2503006715; PFAM: MotA/TolQ/ExbB proton channel family.
    
   0.521
Dalk_0504
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: esi:Exig_2221 peptidase M24; IMG reference gene:2503006204; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
    
 0.500
Dalk_0507
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: dol:Dole_1673 peptidase M24; IMG reference gene:2503006207; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
    
 0.500
Dalk_3688
Peptidase M24; PFAM: creatinase; peptidase M24; KEGG: bur:Bcep18194_B2694 peptidase M24; IMG reference gene:2503009432; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain.
    
 0.500
Dalk_1490
KEGG: pca:Pcar_1794 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; IMG reference gene:2503007200; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
  
  0.491
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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