STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1231PFAM: GCN5-related N-acetyltransferase; KEGG: rba:RB2928 putative acetyltransferase; IMG reference gene:2503006934; PFAM: Acetyltransferase (GNAT) family. (162 aa)    
Predicted Functional Partners:
Dalk_4126
PFAM: GCN5-related N-acetyltransferase; KEGG: jan:Jann_3325 GCN5-related N-acetyltransferase; IMG reference gene:2503009872; PFAM: Acetyltransferase (GNAT) family.
 
 
 0.789
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
    
  0.767
Dalk_0026
Methionyl-tRNA synthetase; methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; IMG reference gene:2503005721; PFAM: Anticodon-binding domain; tRNA synthetases class I (M); Putative tRNA binding domain; TIGRFAM: methionyl-tRNA synthetase C-terminal region/beta [...]
    
  0.739
Dalk_4030
PFAM: aminotransferase class-III; KEGG: bpl:BURPS1106A_A0436 hypothetical protein; IMG reference gene:2503009775; PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase.
     
 0.618
Dalk_1233
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3382 HAD-superfamily hydrolase, subfamily IA, variant 1; IMG reference gene:2503006936; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; 2-phosphoglycolate phosphatase, prokaryotic.
 
     0.600
Dalk_1232
TIGRFAM: signal peptide peptidase SppA, 36K type; PFAM: peptidase S49; KEGG: sfu:Sfum_1962 signal peptide peptidase SppA, 36K type; IMG reference gene:2503006935; PFAM: Peptidase family S49; TIGRFAM: signal peptide peptidase SppA, 36K type.
  
    0.589
Dalk_1173
Diaminobutyrate/2-oxoglutarate aminotransferase; Catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; IMG reference gene:2503006875; PFAM: Aminotransferase class-III; TIGRFAM: 2,4-diaminobutyrate 4-transaminases; diaminobutyrate--2-oxoglutarate aminotransferase.
    
 0.586
Dalk_4472
PFAM: aminotransferase class-III; KEGG: sus:Acid_7662 aminotransferase; IMG reference gene:2503010223; PFAM: Aminotransferase class-III.
    
 0.586
Dalk_1490
KEGG: pca:Pcar_1794 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; IMG reference gene:2503007200; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
    
 0.580
Dalk_3405
PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: dol:Dole_1119 phosphoribosyl-AMP cyclohydrolase; IMG reference gene:2503009137; PFAM: Phosphoribosyl-AMP cyclohydrolase.
    
  0.576
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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