STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Experiments
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[Homology]
Score
Dalk_1237PFAM: PP-loop domain protein; KEGG: dol:Dole_2223 PP-loop domain-containing protein; IMG reference gene:2503006940; PFAM: PP-loop family. (252 aa)    
Predicted Functional Partners:
Dalk_1238
TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: dol:Dole_2222 DNA-directed RNA polymerase, omega subunit; IMG reference gene:2503006941; PFAM: RNA polymerase Rpb6; TIGRFAM: DNA-directed RNA polymerase, omega subunit.
  
    0.831
Dalk_2473
PFAM: ExsB family protein; PP-loop domain protein; KEGG: chy:CHY_1281 hypothetical protein; IMG reference gene:2503008194; PFAM: Asparagine synthase; TIGRFAM: TIGR00268 family protein.
 
    0.826
Dalk_0117
GMP synthase, large subunit; Contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; IMG reference gene:2503005812; PFAM: Glutamine amidotransferase class-I; GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit.
  
 
 0.809
Dalk_1056
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_2590 beta-ketoacyl synthase; IMG reference gene:2503006757; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA.
  
 
 0.749
Dalk_1236
PFAM: protein of unknown function DUF198; KEGG: dol:Dole_2224 hypothetical protein; IMG reference gene:2503006939; PFAM: Uncharacterized ACR, COG1469; TIGRFAM: TIGR00294 family protein.
       0.719
Dalk_2649
TIGRFAM: cysteine desulfurase NifS; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sfu:Sfum_2683 aminotransferase, class V; IMG reference gene:2503008371; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS.
    
 0.714
Dalk_5220
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dol:Dole_2243 aminotransferase class V; IMG reference gene:2503010979; PFAM: Aminotransferase class-V.
    
 0.714
Dalk_0518
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503006218; PFAM: Pyridine nucleotide-disulphide oxidoreductase; GXGXG motif.
    
  0.706
Dalk_0333
PFAM: Rieske [2Fe-2S] domain protein; KEGG: cts:Ctha_2405 Rieske (2Fe-2S) domain protein; IMG reference gene:2503006030; PFAM: Rieske [2Fe-2S] domain.
    
  0.695
Dalk_1776
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: ppd:Ppro_1969 molybdopterin biosynthesis MoaE; IMG reference gene:2503007487; PFAM: MoaE protein.
     
 0.682
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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