STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1256TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_2307 amino acid ABC transporter permease; IMG reference gene:2503006959; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family. (267 aa)    
Predicted Functional Partners:
Dalk_1255
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dvl:Dvul_1824 extracellular solute-binding protein; IMG reference gene:2503006958; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 0.999
Dalk_1257
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvl:Dvul_1826 ABC transporter related; IMG reference gene:2503006960; PFAM: ABC transporter.
 0.999
Dalk_0037
PFAM: extracellular solute-binding protein family 3; KEGG: cyt:cce_1138 two-component hybrid sensor and regulator; IMG reference gene:2503005732; PFAM: Bacterial extracellular solute-binding proteins, family 3.
 
 0.973
Dalk_2291
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsq:Rsph17025_1984 ABC transporter related; IMG reference gene:2503008011; PFAM: ABC transporter.
   
 0.971
Dalk_0593
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_2507 ABC transporter related; IMG reference gene:2503006294; PFAM: ABC transporter.
 
 
 
 0.970
Dalk_1362
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dol:Dole_0507 ABC transporter-related protein; IMG reference gene:2503007067; PFAM: ABC transporter.
   
 0.968
Dalk_1786
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dol:Dole_2845 ABC transporter-related protein; IMG reference gene:2503007497; PFAM: ABC transporter.
 
 
 
 0.966
Dalk_4859
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0366 ABC-type transport system, ATPase component PhnL; IMG reference gene:2503010617; PFAM: ABC transporter.
 
 
 
 0.965
Dalk_5082
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA3642 iron ABC transporter, ATP-binding protein; IMG reference gene:2503010841; PFAM: ABC transporter.
 
   
 0.963
Dalk_0584
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_0252 ABC transporter related; IMG reference gene:2503006285; PFAM: ABC transporter.
 
 
 
 0.955
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.