STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1276KEGG: mem:Memar_0416 putative transcriptional regulator; IMG reference gene:2503006979; PFAM: Divergent AAA domain. (554 aa)    
Predicted Functional Partners:
Dalk_0064
PFAM: SMC domain protein; KEGG: rpc:RPC_3543 SMC protein-like; IMG reference gene:2503005759.
  
    0.614
Dalk_4769
PFAM: SMC domain protein; KEGG: reh:PHG151 hypothetical protein; IMG reference gene:2503010526.
  
    0.614
Dalk_0155
PFAM: filamentation induced by cAMP protein Fic; KEGG: dol:Dole_0828 filamentation induced by cAMP protein Fic; IMG reference gene:2503005850; PFAM: Fic/DOC family.
 
  
  0.521
Dalk_4808
KEGG: dol:Dole_0239 transcriptional regulator-like protein; IMG reference gene:2503010565.
  
 
  0.476
Dalk_4932
PFAM: Helix-turn-helix type 11 domain protein; KEGG: gur:Gura_0944 helix-turn-helix, type 11 domain-containing protein; IMG reference gene:2503010691; PFAM: HTH domain.
  
 
  0.476
Dalk_0315
PFAM: protein of unknown function DUF559; KEGG: nmc:NMC0366 hypothetical protein; IMG reference gene:2503006012; PFAM: Protein of unknown function (DUF559).
    
  0.461
Dalk_4178
PFAM: filamentation induced by cAMP protein Fic; KEGG: pca:Pcar_2123 hypothetical protein; IMG reference gene:2503009924; PFAM: Fic/DOC family.
 
  
  0.461
Dalk_1277
Protein serine/threonine phosphatase; PFAM: histidine kinase HAMP region domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mhu:Mhun_0060 serine phosphatase; IMG reference gene:2503006980; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE).
  
    0.453
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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