STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1384PFAM: peptidase C1A papain; SMART: Fibronectin type III domain protein; KEGG: pca:Pcar_0046 putative serine protease; IMG reference gene:2503007089; PFAM: Papain family cysteine protease. (908 aa)    
Predicted Functional Partners:
Dalk_0505
KEGG: dol:Dole_1575 hypothetical protein; IMG reference gene:2503006205; PFAM: Dynamin family.
   
 
 0.798
Dalk_2206
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ava:Ava_3503 AAA ATPase, central region; IMG reference gene:2503007926; PFAM: ATPase family associated with various cellular activities (AAA).
    
 0.788
Dalk_4807
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: dol:Dole_0240 ATPase central domain-containing protein; IMG reference gene:2503010564; PFAM: ATPase family associated with various cellular activities (AAA).
    
 0.788
Dalk_4974
Citrate Synthase, Type II; KEGG: dol:Dole_0026 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; IMG reference gene:2503010733; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type).
    
 
 0.751
Dalk_3510
PFAM: PEBP family protein; KEGG: sat:SYN_03131 phosphatidylethanolamine-binding protein; IMG reference gene:2503009242; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family.
   
 
 0.734
Dalk_4145
PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: Peptidyl-prolyl cis-trans isomerase (ISS); K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B); IMG reference gene:2503009891; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
    
 
 0.715
Dalk_5135
PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: noc:Noc_2251 peptidylprolyl isomerase; IMG reference gene:2503010894; PFAM: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD.
    
 
 0.715
Dalk_1891
PFAM: ribosomal protein S11; KEGG: gme:Gmet_0651 30S ribosomal protein S11; IMG reference gene:2503007603; PFAM: Ribosomal protein S11; TIGRFAM: 30S ribosomal protein S11.
   
 0.702
Dalk_3626
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; IMG reference gene:2503009370; PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta chain, C terminal domain; ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATP synthase, F1 beta subunit.
     
 0.686
Dalk_4663
PFAM: peptidase M14 carboxypeptidase A; KEGG: LOC563008; similar to carboxypeptidase D; K07752 carboxypeptidase D; IMG reference gene:2503010419; PFAM: Zinc carboxypeptidase.
  
   
 0.635
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.