STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1407TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: slo:Shew_2558 1,4-dihydroxy-2-naphthoate octaprenyltransferase; IMG reference gene:2503007112; PFAM: UbiA prenyltransferase family; TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase. (292 aa)    
Predicted Functional Partners:
Dalk_1408
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: sat:SYN_02619 O-succinylbenzoate synthase; IMG reference gene:2503007113; PFAM: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; TIGRFAM: o-succinylbenzoate synthase.
 
   
 0.946
Dalk_1410
PFAM: alpha/beta hydrolase fold; KEGG: sat:SYN_02621 menaquinone biosynthesis related protein, hydrolase; IMG reference gene:2503007115; PFAM: alpha/beta hydrolase fold; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase.
 
 
 
 0.929
Dalk_1409
PFAM: AMP-dependent synthetase and ligase; KEGG: sat:SYN_02620 O-succinylbenzoic acid--CoA ligase; IMG reference gene:2503007114; PFAM: AMP-binding enzyme; TIGRFAM: O-succinylbenzoate-CoA ligase.
 
   
 0.899
Dalk_1406
Naphthoate synthase; Catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; IMG reference gene:2503007111; PFAM: Enoyl-CoA hydratase/isomerase family; TIGRFAM: naphthoate synthase (dihydroxynaphthoic acid synthetase).
 
   
 0.890
Dalk_1405
KEGG: sat:SYN_02399 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; TIGRFAM: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; IMG reference gene:2503007110; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylic-acid synthase.
 
   
 0.861
Dalk_4499
TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dps:DP1332 2-heptaprenyl-1,4-naphthoquinone methyltransferase; IMG reference gene:2503010250; PFAM: ubiE/COQ5 methyltransferase family; TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases.
 
  
 0.818
Dalk_0225
Methyltransferase type 11; PFAM: protein of unknown function DUF343; Methyltransferase type 11; KEGG: sfu:Sfum_1245 methyltransferase type 11; IMG reference gene:2503005921; PFAM: Methyltransferase domain.
    
 0.727
Dalk_2504
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; protein of unknown function DUF343; Methyltransferase type 11; Methyltransferase type 12; KEGG: dol:Dole_1903 methyltransferase type 11; IMG reference gene:2503008225; PFAM: Methyltransferase domain.
    
 0.727
Dalk_1404
TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like; KEGG: sat:SYN_02398 isochorismate synthase; IMG reference gene:2503007109; PFAM: chorismate binding enzyme; TIGRFAM: isochorismate synthases.
 
   
 0.710
Dalk_3710
KEGG: dol:Dole_0383 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; IMG reference gene:2503009454; PFAM: LytB protein; UbiA prenyltransferase family; TIGRFAM: (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming).
    
 0.680
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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