STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1444TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pca:Pcar_0668 membrane-fusion protein, putative Acr family; IMG reference gene:2503007149; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit. (414 aa)    
Predicted Functional Partners:
Dalk_1445
PFAM: acriflavin resistance protein; KEGG: pca:Pcar_0669 cation/multidrug efflux pump, Acr family; IMG reference gene:2503007150; PFAM: AcrB/AcrD/AcrF family.
 
 0.997
Dalk_1443
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: mfa:Mfla_1591 RND efflux system, outer membrane lipoprotein, NodT; IMG reference gene:2503007148; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 0.991
Dalk_3415
PFAM: acriflavin resistance protein; KEGG: pca:Pcar_0669 cation/multidrug efflux pump, Acr family; IMG reference gene:2503009147; PFAM: AcrB/AcrD/AcrF family.
 
 0.988
Dalk_4834
TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: sfu:Sfum_3679 acriflavin resistance protein; IMG reference gene:2503010592; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.
 
 0.959
Dalk_0585
PFAM: protease-associated PA domain protein; protein of unknown function DUF214; KEGG: dps:DP1755 hypothetical protein; IMG reference gene:2503006286; PFAM: Predicted permease; Peptidase family M28.
  
 0.958
Dalk_4858
PFAM: protein of unknown function DUF214; KEGG: pca:Pcar_0367 ABC-type transport system, permease component; IMG reference gene:2503010616; PFAM: Predicted permease.
  
 0.956
Dalk_3731
PFAM: acriflavin resistance protein; KEGG: ade:Adeh_1476 acriflavin resistance protein; IMG reference gene:2503009475; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family.
 
 0.955
Dalk_2343
PFAM: acriflavin resistance protein; KEGG: dde:Dde_0548 AcrB/AcrD/AcrF family protein; IMG reference gene:2503008063; PFAM: AcrB/AcrD/AcrF family.
 
 0.952
Dalk_4861
PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0364 outer membrane channel protein; IMG reference gene:2503010619; PFAM: Outer membrane efflux protein.
 
 0.950
Dalk_4833
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sat:SYN_02073 type I secretion outer membrane protein; IMG reference gene:2503010591; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 0.948
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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