STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1478PFAM: 4-vinyl reductase 4VR; KEGG: dol:Dole_0692 4-vinyl reductase 4VR; IMG reference gene:2503007188; PFAM: V4R domain. (247 aa)    
Predicted Functional Partners:
Dalk_1072
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dps:DP1925 Ntr family two-component system sensory/regulatory protein; IMG reference gene:2503006773; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box.
    
 0.801
Dalk_2482
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: ava:Ava_1343 PAS/PAC sensor hybrid histidine kinase; IMG reference gene:2503008203; PFAM: Response regulator receiver domain; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold.
    
 0.780
Dalk_1479
PFAM: regulatory protein GntR HTH; KEGG: nfa:nfa16280 putative transcriptional regulator; IMG reference gene:2503007189; PFAM: Bacterial regulatory proteins, gntR family; FadR C-terminal domain.
       0.773
Dalk_0725
PFAM: NifH/frxC-family protein; oxidoreductase/nitrogenase component 1; KEGG: dsy:DSY3862 putative nitrogenase subunit NifH; IMG reference gene:2503006426; PFAM: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase iron protein.
  
 
 0.772
Dalk_2894
GAF sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sfu:Sfum_2658 PAS/PAC sensor hybrid histidine kinase; IMG reference gene:2503008619; PFAM: Response regulator receiver domain; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
    
 0.762
Dalk_0030
PFAM: alpha/beta hydrolase fold; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_1480 radical SAM domain-containing protein; IMG reference gene:2503005725; PFAM: Radical SAM superfamily; alpha/beta hydrolase fold.
  
 
 0.702
Dalk_4123
Radical SAM domain protein; PFAM: TPR repeat-containing protein; cobalamin B12-binding domain protein; Radical SAM domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide domain protein; KEGG: gme:Gmet_1171 radical SAM family protein; IMG reference gene:2503009869; PFAM: Radical SAM superfamily; Tetratricopeptide repeat; B12 binding domain.
  
 
 0.685
Dalk_0083
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tvo:TVN0581 Fe-S oxidoreductase; IMG reference gene:2503005778; PFAM: Radical SAM superfamily; B12 binding domain.
  
 
 0.681
Dalk_0086
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_2407 radical SAM domain-containing protein; IMG reference gene:2503005781; PFAM: Radical SAM superfamily; B12 binding domain.
  
 
 0.681
Dalk_0088
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_2407 radical SAM domain-containing protein; IMG reference gene:2503005783; PFAM: Radical SAM superfamily; B12 binding domain.
  
 
 0.681
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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