STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1508PFAM: Integrase catalytic region; KEGG: pca:Pcar_0539 putative transposase; IMG reference gene:2503007218; PFAM: Integrase core domain. (327 aa)    
Predicted Functional Partners:
Dalk_1330
PFAM: transposase IS204/IS1001/IS1096/IS1165 family protein; KEGG: cti:pRALTA_0587 transposase, ISL3 family; IMG reference gene:2503007034; PFAM: Transposase.
 
     0.465
Dalk_3746
PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; IMG reference gene:2503009490; PFAM: Transposase DDE domain.
  
     0.460
Dalk_3994
PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; IMG reference gene:2503009739; PFAM: Transposase DDE domain.
  
     0.460
Dalk_2552
PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; IMG reference gene:2503008273; PFAM: Transposase DDE domain.
  
     0.456
Dalk_0857
PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; IMG reference gene:2503006558; PFAM: Transposase DDE domain.
  
     0.455
Dalk_4290
PFAM: transposase IS4 family protein; KEGG: mgm:Mmc1_3637 transposase, IS4 family protein; IMG reference gene:2503010038; PFAM: Transposase DDE domain.
  
     0.455
Dalk_0199
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein; IMG reference gene:2503005894; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
 
  
 0.452
Dalk_0601
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein; IMG reference gene:2503006302; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
 
  
 0.452
Dalk_1827
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein; IMG reference gene:2503007539; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
 
  
 0.452
Dalk_2147
PFAM: transposase IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: pvi:Cvib_1053 transposase IS116/IS110/IS902 family protein; IMG reference gene:2503007867; PFAM: Transposase IS116/IS110/IS902 family; Transposase.
 
  
 0.452
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.