STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1532PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dps:DP0149 dipeptide ABC transporter, permease protein (DppC); IMG reference gene:2503007242; PFAM: Binding-protein-dependent transport system inner membrane component. (306 aa)    
Predicted Functional Partners:
Dalk_1530
KEGG: dvl:Dvul_2803 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; IMG reference gene:2503007240; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
 
 0.999
Dalk_1531
KEGG: dvl:Dvul_2802 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; IMG reference gene:2503007241; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
 
 0.999
Dalk_0264
KEGG: chy:CHY_1126 oligopeptide/dipeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; IMG reference gene:2503005960; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
 
 0.997
Dalk_0965
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; IMG reference gene:2503006666; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
 
 0.997
Dalk_1533
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0274 oligopeptide/dipeptide ABC transporter, permease protein; IMG reference gene:2503007243; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.997
Dalk_0265
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: gtn:GTNG_0477 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; IMG reference gene:2503005961; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
 
 0.993
Dalk_0966
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: gtn:GTNG_3281 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; IMG reference gene:2503006667; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain.
 
 0.993
Dalk_0262
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_2407 binding-protein-dependent transport systems inner membrane component; IMG reference gene:2503005958; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.988
Dalk_1534
PFAM: extracellular solute-binding protein family 5; KEGG: dde:Dde_0275 oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein; IMG reference gene:2503007244; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 0.988
Dalk_0869
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: deb:DehaBAV1_1283 binding-protein-dependent transport systems inner membrane component; IMG reference gene:2503006570; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.982
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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