STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1541PFAM: cyclase family protein; KEGG: sil:SPO0835 cyclase, putative; IMG reference gene:2503007251; PFAM: Putative cyclase. (259 aa)    
Predicted Functional Partners:
Dalk_1540
PFAM: protein of unknown function DUF849; KEGG: pat:Patl_2322 hypothetical protein; IMG reference gene:2503007250; PFAM: Prokaryotic protein of unknown function (DUF849).
 
    0.905
Dalk_3456
KEGG: ypb:YPTS_0831 tartrate/fumarate subfamily Fe-S type hydro-lyase beta subunit; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; IMG reference gene:2503009188; PFAM: Fumarase C-terminus; Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region.
    
  0.813
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
    
  0.771
Dalk_3782
Pyruvate carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: dol:Dole_0075 hypothetical protein; IMG reference gene:2503009526; PFAM: HMGL-like; Conserved carboxylase domain; Biotin-requiring enzyme.
    
  0.741
Dalk_2523
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0824 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503008244; PFAM: Pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S binding domain; TIGRFAM: putative selenate reductase, YgfK subunit.
    
  0.703
Dalk_5182
Electron transfer flavoprotein (Etf), alpha subunit; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: cbk:CLL_A0376 electron transfer flavoprotein, alpha subunit/FixB family protein; IMG reference gene:2503010941; PFAM: Cupin domain; Helix-turn-helix; Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
  
    0.677
Dalk_3351
PFAM: protein of unknown function DUF849; KEGG: dol:Dole_2170 hypothetical protein; IMG reference gene:2503009081; PFAM: Prokaryotic protein of unknown function (DUF849).
 
    0.634
Dalk_0258
PFAM: protein of unknown function DUF849; KEGG: amt:Amet_0318 hypothetical protein; IMG reference gene:2503005954; PFAM: Prokaryotic protein of unknown function (DUF849).
 
    0.631
Dalk_1539
PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aeh:Mlg_0532 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; IMG reference gene:2503007249; PFAM: Acetyltransferase (GNAT) family; Carbon-nitrogen hydrolase.
    
 0.631
Dalk_2440
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cak:Caul_1890 fumarylacetoacetate (FAA) hydrolase; IMG reference gene:2503008161; PFAM: Fumarylacetoacetate (FAA) hydrolase family.
      0.595
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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