STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1564KEGG: tye:THEYE_A1310 HD domain protein; IMG reference gene:2503007274; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG. (182 aa)    
Predicted Functional Partners:
Dalk_1562
TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: dol:Dole_1767 peptide chain release factor 2; IMG reference gene:2503007272; PFAM: PCRF domain; RF-1 domain; TIGRFAM: peptide chain release factor 2.
  
    0.818
Dalk_1563
PFAM: RimK domain protein ATP-grasp; KEGG: dol:Dole_1115 RimK domain-containing protein ATP-grasp; IMG reference gene:2503007273; PFAM: RimK-like ATP-grasp domain.
       0.758
Dalk_3314
KEGG: dol:Dole_2077 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; IMG reference gene:2503009044; PFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase.
    
  0.736
Dalk_4695
TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dol:Dole_0684 molybdenum cofactor synthesis domain-containing protein; IMG reference gene:2503010451; PFAM: Probable molybdopterin binding domain; MoeA N-terminal region (domain I and II); MoeA C-terminal region (domain IV); TIGRFAM: molybdenum cofactor synthesis domain.
    
  0.711
Dalk_5101
MCP methyltransferase/methylesterase CheR/CheB with PAS/PAC sensor; KEGG: mbu:Mbur_0399 MCP methyltransferase, CheR-type; TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase CheR-type; PAS fold domain protein; SMART: PAS domain containing protein; IMG reference gene:2503010860; PFAM: CheB methylesterase; CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box.
    
  0.676
Dalk_1011
PFAM: flagellar basal body-associated protein FliL; KEGG: cco:CCC13826_1320 flagellar basal body-associated protein FliL; IMG reference gene:2503006712; PFAM: Flagellar basal body-associated protein FliL.
    
   0.644
Dalk_5221
Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase RecJ domain protein; Polynucleotide adenylyltransferase region; phosphoesterase DHHA1; KEGG: dol:Dole_2755 CBS domain-containing protein; IMG reference gene:2503010980; PFAM: DHHA1 domain; DHH family; CBS domain; Poly A polymerase head domain.
 
  
 0.586
Dalk_5211
PFAM: phosphofructokinase; KEGG: dol:Dole_1694 phosphofructokinase; IMG reference gene:2503010970; PFAM: Phosphofructokinase; TIGRFAM: diphosphate--fructose-6-phosphate 1-phosphotransferase.
 
 
 0.580
Dalk_1012
PFAM: OmpA/MotB domain protein; KEGG: maq:Maqu_0050 OmpA/MotB domain-containing protein; IMG reference gene:2503006713; PFAM: OmpA family.
    
   0.536
Dalk_1013
PFAM: OmpA/MotB domain protein; KEGG: cdf:CD0257 chemotaxis protein; IMG reference gene:2503006714; PFAM: OmpA family.
    
   0.536
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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