STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1618PFAM: regulatory protein MarR; KEGG: swo:Swol_0269 transcriptional regulator, MarR family; IMG reference gene:2503007328; PFAM: MarR family. (158 aa)    
Predicted Functional Partners:
Dalk_1646
PFAM: regulatory protein MarR; KEGG: gme:Gmet_2133 MarR family transcriptional regulator; IMG reference gene:2503007356; PFAM: MarR family.
  
     0.697
Dalk_1619
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: bpt:Bpet1214 acyl-CoA dehydrogenase; IMG reference gene:2503007329; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain.
    
  0.607
Dalk_5086
PFAM: regulatory protein MarR; KEGG: cbt:CLH_2427 transcriptional regulator, MarR/EmrR family; IMG reference gene:2503010845; PFAM: MarR family.
  
     0.592
Dalk_1620
Ribokinase; TIGRFAM: deoxyribose-phosphate aldolase; ribokinase; PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; PfkB domain protein; Phosphomethylpyrimidine kinase type-1; KEGG: NEMVEDRAFT_v1g199933; predicted protein; K00852 ribokinase; IMG reference gene:2503007330; PFAM: DeoC/LacD family aldolase; pfkB family carbohydrate kinase; TIGRFAM: deoxyribose-phosphate aldolase; ribokinase.
    
  0.537
Dalk_1623
PFAM: regulatory protein MarR; KEGG: cbo:CBO1102 MarR-family transcriptional regulator; IMG reference gene:2503007333; PFAM: MarR family.
  
     0.476
Dalk_4095
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: hau:Haur_0091 AraC family transcriptional regulator; IMG reference gene:2503009840; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain.
  
  
 0.436
Dalk_4953
PFAM: FAD linked oxidase domain protein; KEGG: dac:Daci_0064 FAD linked oxidase domain-containing protein; IMG reference gene:2503010712; PFAM: FAD binding domain.
  
  
  0.427
Dalk_2752
Transketolase family protein; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region; KEGG: dol:Dole_0367 transketolase; IMG reference gene:2503008475; PFAM: Transketolase, thiamine diphosphate binding domain; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; TIGRFAM: transketolase, bacterial and yeast.
   
 
 0.404
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.