STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Dalk_16304Fe-4S cluster domain protein associated with 2-oxoglutarate synthase; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sfu:Sfum_0018 4Fe-4S ferredoxin, iron-sulfur binding domain protein; IMG reference gene:2503007340; PFAM: 4Fe-4S binding domain. (91 aa)    
Predicted Functional Partners:
Dalk_4144
Pyruvate-ferredoxin oxidoreductase, alpha subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; IMG reference gene:2503009890; PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin [...]
  
 
 0.995
Dalk_1627
2-Oxoglutarate synthase (gamma subunit); PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sfu:Sfum_0015 2-oxoglutarate synthase; IMG reference gene:2503007337; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.
 
 
 0.982
Dalk_1629
2-Oxoglutarate synthase (alpha subunit); PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: sfu:Sfum_0017 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; IMG reference gene:2503007339; PFAM: domain; Transketolase, C-terminal domain.
 
 
 0.949
Dalk_2711
2-Oxoglutarate synthase (gamma subunit); PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dol:Dole_3019 2-oxoglutarate synthase; IMG reference gene:2503008434; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.
 
 
 0.938
Dalk_2231
2-oxoacid ferredoxin oxidoreductase, alpha subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: fno:Fnod_0111 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; IMG reference gene:2503007951; PFAM: domain; Transketolase, C-terminal domain.
 
 
 0.935
Dalk_0818
TIGRFAM: malate dehydrogenase, NAD-dependent; PFAM: Lactate/malate dehydrogenase; KEGG: dol:Dole_2374 malate dehydrogenase, NAD-dependent; IMG reference gene:2503006519; PFAM: lactate/malate dehydrogenase, alpha/beta C-terminal domain; lactate/malate dehydrogenase, NAD binding domain; TIGRFAM: malate dehydrogenase, NAD-dependent.
  
 
 0.930
Dalk_2232
2-oxoacid ferredoxin oxidoreductase, beta subunit; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cbl:CLK_2865 putative 2-oxoacid:acceptor oxidoreductase, beta subunit; IMG reference gene:2503007952; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
 
 
 0.927
Dalk_1628
2-Oxoglutarate synthase (beta subunit); Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; IMG reference gene:2503007338; PFAM: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain.
 
 
 0.921
Dalk_2233
2-oxoacid ferredoxin oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase, gamma subunit; IMG reference gene:2503007953; PFAM: Pyruvate ferredoxin/flavodoxin oxidoreductase; TIGRFAM: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family.
 
 
 0.915
Dalk_0518
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; glutamate synthase alpha subunit domain protein; KEGG: sfu:Sfum_1723 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; IMG reference gene:2503006218; PFAM: Pyridine nucleotide-disulphide oxidoreductase; GXGXG motif.
  
 0.909
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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