STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1638TIGRFAM: methyltransferase; KEGG: mac:MA2903 hypothetical protein; IMG reference gene:2503007348; PFAM: Leucine carboxyl methyltransferase; TIGRFAM: methyltransferase, putative, TIGR00027 family. (301 aa)    
Predicted Functional Partners:
Dalk_1969
TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: sfu:Sfum_1185 phosphoribosylglycinamide formyltransferase; IMG reference gene:2503007686; PFAM: Formyl transferase; TIGRFAM: phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent.
     
 0.630
Dalk_1637
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: rpe:RPE_3197 NAD-dependent epimerase/dehydratase; IMG reference gene:2503007347; PFAM: NAD dependent epimerase/dehydratase family.
       0.515
Dalk_5057
PFAM: MaoC domain protein dehydratase; KEGG: rha:RHA1_ro08447 dehydratase; IMG reference gene:2503010816; PFAM: MaoC like domain.
  
     0.482
Dalk_1639
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dau:Daud_2195 putative regulatory protein, FmdB family; IMG reference gene:2503007349; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family.
       0.446
Dalk_0210
KEGG: dol:Dole_2824 hypothetical protein; IMG reference gene:2503005906; PFAM: Uncharacterised protein family (UPF0227).
  
     0.436
Dalk_1945
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: npu:Npun_F0952 methyltransferase type 11; IMG reference gene:2503007662; PFAM: Methyltransferase domain.
 
  
  0.435
Dalk_2661
KEGG: mgi:Mflv_4597 wyosine base formation; IMG reference gene:2503008383; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain; TIGRFAM: TIGR03084 family protein; uncharacterized Actinobacterial protein TIGR03083.
  
     0.431
Dalk_1936
PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: sfu:Sfum_0501 isoprenylcysteine carboxyl methyltransferase; IMG reference gene:2503007653; PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family.
 
     0.411
Dalk_2063
KEGG: mjl:Mjls_3218 wyosine base formation; IMG reference gene:2503007780; PFAM: Mycothiol maleylpyruvate isomerase N-terminal domain; TIGRFAM: TIGR03084 family protein; uncharacterized Actinobacterial protein TIGR03083.
  
     0.411
Dalk_0949
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dol:Dole_2579 methyltransferase type 11; IMG reference gene:2503006650; PFAM: ubiE/COQ5 methyltransferase family.
 
  
  0.404
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
Server load: low (30%) [HD]