STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1639TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: dau:Daud_2195 putative regulatory protein, FmdB family; IMG reference gene:2503007349; PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family. (80 aa)    
Predicted Functional Partners:
Dalk_1640
PFAM: ferric-uptake regulator; FeoA family protein; KEGG: dol:Dole_0342 ferric uptake regulator family protein; IMG reference gene:2503007350; PFAM: FeoA domain; Ferric uptake regulator family.
 
     0.720
Dalk_1642
TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: dol:Dole_0344 ferrous iron transport protein B; IMG reference gene:2503007352; PFAM: Ferrous iron transport protein B; Ferrous iron transport protein B C terminus; Nucleoside recognition; TIGRFAM: ferrous iron transporter FeoB.
       0.615
Dalk_1641
PFAM: FeoA family protein; KEGG: dol:Dole_0343 FeoA family protein; IMG reference gene:2503007351; PFAM: FeoA domain.
       0.601
Dalk_5206
KEGG: dol:Dole_0378 hypothetical protein; IMG reference gene:2503010965.
  
     0.562
Dalk_5194
KEGG: dol:Dole_0046 hypothetical protein; IMG reference gene:2503010953.
  
     0.527
Dalk_0767
KEGG: sfu:Sfum_0343 DnaK-related protein; IMG reference gene:2503006468; PFAM: DNA-K related protein; Hsp70 protein.
  
     0.482
Dalk_4353
Cytochrome c, class III family protein, Rnf-associated; PFAM: cytochrome c class III; KEGG: tye:THEYE_A1056 chain A, cytochrome c3 from Desulfomicrobium Baculatus; IMG reference gene:2503010101; PFAM: Class III cytochrome C family.
  
     0.481
Dalk_2744
KEGG: sfu:Sfum_3308 conserved hypothetical cytosolic protein; IMG reference gene:2503008467.
  
     0.473
Dalk_2527
KEGG: dde:Dde_0600 hypothetical protein; IMG reference gene:2503008248.
  
     0.451
Dalk_5170
PFAM: UspA domain protein; KEGG: sfu:Sfum_0650 UspA domain protein; IMG reference gene:2503010929; PFAM: Universal stress protein family.
  
     0.449
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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