STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1659KEGG: nmu:Nmul_A0409 hypothetical protein; IMG reference gene:2503007369; PFAM: Capsule polysaccharide biosynthesis protein. (461 aa)    
Predicted Functional Partners:
Dalk_1660
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: rpb:RPB_1535 UDP-N-acetylglucosamine 2-epimerase; IMG reference gene:2503007370; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; UDP-N-acetylglucosamine 2-epimerase.
  
 
 0.859
Dalk_1661
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: cth:Cthe_2641 N-acetylneuraminate synthase; IMG reference gene:2503007371; PFAM: SAF domain; NeuB family.
  
  
 0.791
Dalk_1662
Methyltransferase type 12; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0456 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase-like; IMG reference gene:2503007372; PFAM: Methyltransferase domain.
    
 0.770
Dalk_1807
PFAM: glycosyl transferase family 2; KEGG: lbf:LBF_4116 bifunctional glycosyltransferase/sugar pyrophosphorylase; IMG reference gene:2503007518; PFAM: Glycosyl transferase family 2.
  
 0.738
Dalk_0887
Amylo-alpha-16-glucosidase; PFAM: alpha amylase catalytic region; Amylo-alpha-16-glucosidase; SMART: alpha amylase catalytic sub domain; KEGG: sat:SYN_00295 glycogen debranching enzyme/alpha-amylase; IMG reference gene:2503006588; PFAM: Amylo-alpha-1,6-glucosidase; Glycogen debranching enzyme N terminal; Alpha amylase, catalytic domain; TIGRFAM: glycogen debranching enzyme, archaeal type, putative.
  
 0.732
Dalk_1490
KEGG: pca:Pcar_1794 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin 2 conserved barrel domain protein; IMG reference gene:2503007200; PFAM: Nucleotidyl transferase; Mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
  
 
 0.708
Dalk_0889
KEGG: sat:SYN_02257 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; IMG reference gene:2503006590; PFAM: Alpha amylase, C-terminal all-beta domain; Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Alpha amylase, catalytic domain.
   
 0.693
Dalk_1831
PFAM: glycoside hydrolase family 13 domain protein; KEGG: fno:Fnod_1180 glycoside hydrolase family 13 domain protein; IMG reference gene:2503007543; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain).
   
 0.693
Dalk_3691
PFAM: glycoside hydrolase family 13 domain protein; KEGG: fno:Fnod_1616 glycoside hydrolase family 13 domain protein; IMG reference gene:2503009435; PFAM: Carbohydrate-binding module 48 (Isoamylase N-terminal domain).
   
 0.693
Dalk_1657
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dol:Dole_1302 polysaccharide biosynthesis protein CapD; IMG reference gene:2503007367; PFAM: Polysaccharide biosynthesis protein.
  
  
 0.689
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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