STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1663PFAM: acylneuraminate cytidylyltransferase; KEGG: cbl:CLK_2102 N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase); IMG reference gene:2503007373; PFAM: Cytidylyltransferase. (242 aa)    
Predicted Functional Partners:
Dalk_1661
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: cth:Cthe_2641 N-acetylneuraminate synthase; IMG reference gene:2503007371; PFAM: SAF domain; NeuB family.
 
 
 0.969
Dalk_1660
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: rpb:RPB_1535 UDP-N-acetylglucosamine 2-epimerase; IMG reference gene:2503007370; PFAM: UDP-N-acetylglucosamine 2-epimerase; TIGRFAM: UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing; UDP-N-acetylglucosamine 2-epimerase.
 
  
 0.955
Dalk_0632
PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: rca:Rcas_0774 N-acylneuraminate-9-phosphate synthase; IMG reference gene:2503006333; PFAM: SAF domain; NeuB family; TIGRFAM: pseudaminic acid synthase.
 
 
 0.922
Dalk_1664
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: mth:MTH970 D-3-phosphoglycerate dehydrogenase; IMG reference gene:2503007374; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain.
   
  0.796
Dalk_1365
TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: dol:Dole_0510 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; IMG reference gene:2503007070; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; HAD-superfamily hydrolase, subfamily IIIA.
 
 
  0.726
Dalk_1662
Methyltransferase type 12; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_0456 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1 4-benzoquinol methylase-like; IMG reference gene:2503007372; PFAM: Methyltransferase domain.
     0.717
Dalk_1667
PFAM: dihydrodipicolinate synthetase; KEGG: cpo:COPRO5265_1180 dihydrodipicolinate synthase (DHDPS); IMG reference gene:2503007377; PFAM: Dihydrodipicolinate synthetase family.
    
 0.689
Dalk_1668
PFAM: glycosyl transferase family 2; KEGG: syn:slr2120 hypothetical protein; IMG reference gene:2503007378; PFAM: Cytidylyltransferase; Glycosyl transferase family 2.
 
    0.656
Dalk_1659
KEGG: nmu:Nmul_A0409 hypothetical protein; IMG reference gene:2503007369; PFAM: Capsule polysaccharide biosynthesis protein.
  
    0.636
Dalk_0994
PFAM: protein of unknown function DUF1078 domain protein; KEGG: gsu:GSU3052 flagellar basal-body rod protein FlgG; IMG reference gene:2503006695; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: fagellar hook-basal body proteins.
   
   0.631
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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