STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dalk_1673PFAM: Shikimate dehydrogenase substrate binding domain protein; KEGG: drm:Dred_1018 shikimate 5-dehydrogenase; IMG reference gene:2503007383; PFAM: Shikimate dehydrogenase substrate binding domain; Shikimate / quinate 5-dehydrogenase. (345 aa)    
Predicted Functional Partners:
Dalk_1762
TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: dol:Dole_1949 3-phosphoshikimate 1-carboxyvinyltransferase; IMG reference gene:2503007473; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase.
 
 
 0.950
Dalk_1760
PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: dol:Dole_1950 prephenate dehydratase; IMG reference gene:2503007471; PFAM: Prephenate dehydratase; ACT domain; Chorismate mutase type II.
 
 
 0.949
Dalk_1764
Catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; IMG reference gene:2503007475; PFAM: Chorismate synthase; TIGRFAM: chorismate synthase.
 
 
 0.939
Dalk_1432
PFAM: 3-dehydroquinate synthase; KEGG: sat:SYN_01939 3-dehydroquinate synthase; IMG reference gene:2503007137; PFAM: 3-dehydroquinate synthase; TIGRFAM: 3-dehydroquinate synthase.
 
 
 0.896
Dalk_1672
PFAM: DAHP synthetase I/KDSA; KEGG: tpd:Teth39_0984 3-deoxy-7-phosphoheptulonate synthase; IMG reference gene:2503007382; PFAM: DAHP synthetase I family; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase.
 
  
 0.869
Dalk_1763
PFAM: shikimate kinase; KEGG: sat:SYN_01935 shikimate kinase; IMG reference gene:2503007474; PFAM: Shikimate kinase.
 
 
 0.804
Dalk_4127
KEGG: gbm:Gbem_3777 nicotinate (nicotinamide) nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; IMG reference gene:2503009873; PFAM: Cytidylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain.
  
  
 0.734
Dalk_0052
Transporter, cation-chloride cotransporter (CCC) family (TC 2.A.30); PFAM: amino acid permease-associated region; KEGG: pin:Ping_1733 amino acid permease-associated region; IMG reference gene:2503005747; PFAM: Amino acid permease.
   
 0.723
Dalk_1228
TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: sfu:Sfum_3710 glutamine amidotransferase of anthranilate synthase; IMG reference gene:2503006931; PFAM: Glutamine amidotransferase class-I; TIGRFAM: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase.
 
 0.703
Dalk_1674
PFAM: oxidoreductase domain protein; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: eli:ELI_13345 lipopolysaccharide biosynthesis protein; IMG reference gene:2503007384; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
     
 0.700
Your Current Organism:
Desulfatibacillum alkenivorans AK01
NCBI taxonomy Id: 439235
Other names: D. alkenivorans AK-01, Desulfatibacillum alkenivorans AK-01, Desulfatibacillum alkenivorans str. AK-01, Desulfatibacillum alkenivorans strain AK-01
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